miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 34368 0.7 0.403061
Target:  5'- aGGuCCUGGGCGUuGCGCaccaGCagGUGGUGGc -3'
miRNA:   3'- -CC-GGACCCGCAcCGCGa---CG--CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 34406 0.68 0.498323
Target:  5'- gGGCCaggugaggaucagcUGGGCGUcgcGGUGCgacuccacguagGCGCuGCGGg -3'
miRNA:   3'- -CCGG--------------ACCCGCA---CCGCGa-----------CGCGcCGCC- -5'
14029 5' -65.3 NC_003521.1 + 35813 0.72 0.31034
Target:  5'- cGGCgUGGGCGagaaccUGGCGgUGCGCGcCGa -3'
miRNA:   3'- -CCGgACCCGC------ACCGCgACGCGCcGCc -5'
14029 5' -65.3 NC_003521.1 + 36304 0.66 0.61721
Target:  5'- aGGCC-GGGUGgGGCGCacccucagucgggGCGUGG-GGa -3'
miRNA:   3'- -CCGGaCCCGCaCCGCGa------------CGCGCCgCC- -5'
14029 5' -65.3 NC_003521.1 + 36355 0.74 0.245304
Target:  5'- gGGCUcGGGC-UGGCGUgGCGCGGCu- -3'
miRNA:   3'- -CCGGaCCCGcACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 36784 0.66 0.599596
Target:  5'- uGGCa-GGGCcacGCGCUGCGgagccgcucgcggaCGGCGGa -3'
miRNA:   3'- -CCGgaCCCGcacCGCGACGC--------------GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 37415 0.69 0.451379
Target:  5'- gGGCCUGaccGUGUGGCGCgGCGCcgagccucugaaGGUGa -3'
miRNA:   3'- -CCGGACc--CGCACCGCGaCGCG------------CCGCc -5'
14029 5' -65.3 NC_003521.1 + 37423 0.76 0.171297
Target:  5'- cGGCCUGggaGGCGUGGCcgggaccugagGCgacCGCGGCGGu -3'
miRNA:   3'- -CCGGAC---CCGCACCG-----------CGac-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 37531 0.72 0.297604
Target:  5'- cGuCCUGGGgGUGGgcaGCggggGuCGCGGCGGa -3'
miRNA:   3'- cC-GGACCCgCACCg--CGa---C-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 38234 0.74 0.245304
Target:  5'- cGGCCUcggcGGGCGgGGCGgaGaCGCGGCccaGGg -3'
miRNA:   3'- -CCGGA----CCCGCaCCGCgaC-GCGCCG---CC- -5'
14029 5' -65.3 NC_003521.1 + 38324 0.66 0.639501
Target:  5'- cGGCCaaGGGCGaUGGCGUUuuaggaacguucGC-CGGCGu -3'
miRNA:   3'- -CCGGa-CCCGC-ACCGCGA------------CGcGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 38387 0.68 0.491354
Target:  5'- gGGCCUGGGCGUaGG-GCcgGCcGUccguuccccgaacgGGCGGu -3'
miRNA:   3'- -CCGGACCCGCA-CCgCGa-CG-CG--------------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 38466 0.67 0.565533
Target:  5'- cGUCUGGGCucUGGCGgUGgGCGcCGGc -3'
miRNA:   3'- cCGGACCCGc-ACCGCgACgCGCcGCC- -5'
14029 5' -65.3 NC_003521.1 + 38997 0.72 0.326167
Target:  5'- aGGCgCUGGuGgaUGUGGCGCUgcacggccgucagcaGCGaCGGCGGg -3'
miRNA:   3'- -CCG-GACC-C--GCACCGCGA---------------CGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 39846 0.73 0.279265
Target:  5'- uGGCCUccGGCGUGGgGCUugcaCGUGGUGGg -3'
miRNA:   3'- -CCGGAc-CCGCACCgCGAc---GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 41630 0.72 0.316863
Target:  5'- uGGUCUgGGGCGUGGCGCc-CGUGGUc- -3'
miRNA:   3'- -CCGGA-CCCGCACCGCGacGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 43137 0.75 0.200864
Target:  5'- cGGCgCUGGGCGUggaGGUGCacGCGCuGGUGGc -3'
miRNA:   3'- -CCG-GACCCGCA---CCGCGa-CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 43473 0.68 0.485293
Target:  5'- gGGCCagcGcGGCGgccGUGCUGgcCGCGGCGGc -3'
miRNA:   3'- -CCGGa--C-CCGCac-CGCGAC--GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 45529 0.67 0.547323
Target:  5'- uGGaCUUGGaGCG-GGCGCcccgucaGCGGCGGc -3'
miRNA:   3'- -CC-GGACC-CGCaCCGCGacg----CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 46380 0.71 0.337046
Target:  5'- cGGCUgugagGGGCGcggGGUGCgugGgGCGcGCGGg -3'
miRNA:   3'- -CCGGa----CCCGCa--CCGCGa--CgCGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.