miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 6370 0.68 0.519485
Target:  5'- gGGCCggucgGGGuCGcggaggGGCGCcGCagcuaccGCGGCGGc -3'
miRNA:   3'- -CCGGa----CCC-GCa-----CCGCGaCG-------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 7717 0.7 0.410886
Target:  5'- gGGCUcuuuuUGGGUGgggagggcGGCGCga-GCGGCGGa -3'
miRNA:   3'- -CCGG-----ACCCGCa-------CCGCGacgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 12896 0.68 0.517708
Target:  5'- -aCCUGGgacuaccacagacaGCcUGGCGCUG-GUGGCGGg -3'
miRNA:   3'- ccGGACC--------------CGcACCGCGACgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 13895 0.66 0.630212
Target:  5'- cGCCgggGGGCccGGCGCggaggGgGCcGCGGa -3'
miRNA:   3'- cCGGa--CCCGcaCCGCGa----CgCGcCGCC- -5'
14029 5' -65.3 NC_003521.1 + 13972 0.66 0.620923
Target:  5'- aGCCcugaUGGGCcugcccGGCGCg--GCGGCGGg -3'
miRNA:   3'- cCGG----ACCCGca----CCGCGacgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 17352 0.69 0.426814
Target:  5'- -uCCcGGGcCGUGaCGCcgGCGCGGCGGc -3'
miRNA:   3'- ccGGaCCC-GCACcGCGa-CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 17669 0.69 0.468178
Target:  5'- cGGCCUccagacugcGGGCGUGGUuCU-CGCGGaGGa -3'
miRNA:   3'- -CCGGA---------CCCGCACCGcGAcGCGCCgCC- -5'
14029 5' -65.3 NC_003521.1 + 17693 0.69 0.476698
Target:  5'- cGGCCaacuGGCuccUGGUGCUGCGCGaGaCGGc -3'
miRNA:   3'- -CCGGac--CCGc--ACCGCGACGCGC-C-GCC- -5'
14029 5' -65.3 NC_003521.1 + 18449 0.68 0.511506
Target:  5'- cGGCCUGuGCcgcuucgaccGcGG-GCUGCGCGGCGa -3'
miRNA:   3'- -CCGGACcCG----------CaCCgCGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 18702 0.67 0.538287
Target:  5'- uGGCCggcgcgauccGGCuGUGGCugccGCUG-GCGGCGGc -3'
miRNA:   3'- -CCGGac--------CCG-CACCG----CGACgCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 21271 0.66 0.638572
Target:  5'- uGGCCccguaucUGGaGCGcuucgcggucUGGCuGC-GCGUGGCGGu -3'
miRNA:   3'- -CCGG-------ACC-CGC----------ACCG-CGaCGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 21769 0.72 0.323488
Target:  5'- -aCCUGGGCGccgUGGCGUgccugucCGUGGCGGu -3'
miRNA:   3'- ccGGACCCGC---ACCGCGac-----GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 21940 0.77 0.141987
Target:  5'- cGGCCUcGGGCuggagcaGUGG-GCgaGCGCGGCGGg -3'
miRNA:   3'- -CCGGA-CCCG-------CACCgCGa-CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 25606 0.67 0.555496
Target:  5'- gGGCUUcgcuaccuucaccGGGC-UGGCGCUGC-UGGCGc -3'
miRNA:   3'- -CCGGA-------------CCCGcACCGCGACGcGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 26454 0.67 0.582975
Target:  5'- uGGCCUGcaacGGCGUGGCcugggagcaccGcCUGCGCgcucucuGGCGc -3'
miRNA:   3'- -CCGGAC----CCGCACCG-----------C-GACGCG-------CCGCc -5'
14029 5' -65.3 NC_003521.1 + 28833 0.66 0.611642
Target:  5'- uGUCUGcGGCGccUGGacgacgaGCUGCGgCGGCGcGg -3'
miRNA:   3'- cCGGAC-CCGC--ACCg------CGACGC-GCCGC-C- -5'
14029 5' -65.3 NC_003521.1 + 30160 0.68 0.528408
Target:  5'- uGUCUGGGCGUcacGCGUUGUcgcaugaGCGcGCGGu -3'
miRNA:   3'- cCGGACCCGCAc--CGCGACG-------CGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 30226 0.68 0.511506
Target:  5'- cGGCCguuGGCGUcGCGCUGCaggucCGcGCGGu -3'
miRNA:   3'- -CCGGac-CCGCAcCGCGACGc----GC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 31832 0.73 0.266971
Target:  5'- cGGCCcGGGCGccgaaggUGGCGUUGaagaaGaCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGC-------ACCGCGACg----C-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 32133 0.67 0.538287
Target:  5'- aGGUagcGGGCGcGGUGCaccaaGCGGCGGa -3'
miRNA:   3'- -CCGga-CCCGCaCCGCGacg--CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.