miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 170950 1.1 0.000726
Target:  5'- uGGCCUGGGCGUGGCGCUGCGCGGCGGc -3'
miRNA:   3'- -CCGGACCCGCACCGCGACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 167722 0.81 0.082302
Target:  5'- uGGCCacggUGGauuGCGUGGCGCUGCGguggcCGGCGGa -3'
miRNA:   3'- -CCGG----ACC---CGCACCGCGACGC-----GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 138704 0.8 0.092849
Target:  5'- aGCCUGGGCGgcacgGGCGCUG-GCuGGUGGu -3'
miRNA:   3'- cCGGACCCGCa----CCGCGACgCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 214808 0.78 0.129574
Target:  5'- cGCCgucGGGCGccgGGCGCgGCGaCGGCGGu -3'
miRNA:   3'- cCGGa--CCCGCa--CCGCGaCGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 213118 0.78 0.135809
Target:  5'- cGCgCUGGGUGUGGCGUgGUGCGGCc- -3'
miRNA:   3'- cCG-GACCCGCACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 21940 0.77 0.141987
Target:  5'- cGGCCUcGGGCuggagcaGUGG-GCgaGCGCGGCGGg -3'
miRNA:   3'- -CCGGA-CCCG-------CACCgCGa-CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 110669 0.77 0.15262
Target:  5'- aGGCCaGGGCGUaGCGCUcgguggcgGCaGCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGCAcCGCGA--------CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 37423 0.76 0.171297
Target:  5'- cGGCCUGggaGGCGUGGCcgggaccugagGCgacCGCGGCGGu -3'
miRNA:   3'- -CCGGAC---CCGCACCG-----------CGac-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 76384 0.76 0.171297
Target:  5'- cGGCC-GcGGCcgcgGUGGCGCUGCuagcaccaGCGGCGGu -3'
miRNA:   3'- -CCGGaC-CCG----CACCGCGACG--------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 47379 0.75 0.200864
Target:  5'- uGCCgacgaaGGGUcccagGGCGCUGCGCGaGCGGa -3'
miRNA:   3'- cCGGa-----CCCGca---CCGCGACGCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 43137 0.75 0.200864
Target:  5'- cGGCgCUGGGCGUggaGGUGCacGCGCuGGUGGc -3'
miRNA:   3'- -CCG-GACCCGCA---CCGCGa-CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 102742 0.75 0.210092
Target:  5'- cGGCCUGGGag-GGCcagcgccucaGCUGUccGCGGCGGu -3'
miRNA:   3'- -CCGGACCCgcaCCG----------CGACG--CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 224420 0.74 0.219684
Target:  5'- cGCC--GGCcaGGCGCUGCGUGGUGGg -3'
miRNA:   3'- cCGGacCCGcaCCGCGACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 183795 0.74 0.219684
Target:  5'- uGCCUGGGC--GGCGUguucauccGCGUGGCGGc -3'
miRNA:   3'- cCGGACCCGcaCCGCGa-------CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 135773 0.74 0.22914
Target:  5'- aGGCggugGcGGCaGUGGCGCUGCgggaggaggagcaGCGGCGGa -3'
miRNA:   3'- -CCGga--C-CCG-CACCGCGACG-------------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 196456 0.74 0.23477
Target:  5'- cGGCCUcGGGCGUGGgcCGCagccccaGCGCGucGCGGa -3'
miRNA:   3'- -CCGGA-CCCGCACC--GCGa------CGCGC--CGCC- -5'
14029 5' -65.3 NC_003521.1 + 232206 0.74 0.239989
Target:  5'- gGGCCcccgcGGGUgGUGGUgGCUGUGCGGCGu -3'
miRNA:   3'- -CCGGa----CCCG-CACCG-CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 137298 0.74 0.239989
Target:  5'- aGCUgcggGuGGCGcGGCuGCUGCGCGGCGa -3'
miRNA:   3'- cCGGa---C-CCGCaCCG-CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 36355 0.74 0.245304
Target:  5'- gGGCUcGGGC-UGGCGUgGCGCGGCu- -3'
miRNA:   3'- -CCGGaCCCGcACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 238462 0.74 0.245304
Target:  5'- cGGCCUcggcGGGCGgGGCGgaGaCGCGGCccaGGg -3'
miRNA:   3'- -CCGGA----CCCGCaCCGCgaC-GCGCCG---CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.