miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 129210 0.7 0.383164
Target:  5'- uGGUCUGGcGCGUGGUgggcaguccggcgccGCUggccacGCGCGGCa- -3'
miRNA:   3'- -CCGGACC-CGCACCG---------------CGA------CGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 168417 0.73 0.285276
Target:  5'- uGGCUaGGGCG-GGCgGCaggGcCGCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGCaCCG-CGa--C-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 223404 0.72 0.297604
Target:  5'- gGGCC---GUGUGGCGCcccgGCGCGGCGu -3'
miRNA:   3'- -CCGGaccCGCACCGCGa---CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 41630 0.72 0.316863
Target:  5'- uGGUCUgGGGCGUGGCGCc-CGUGGUc- -3'
miRNA:   3'- -CCGGA-CCCGCACCGCGacGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 89972 0.72 0.316863
Target:  5'- cGGCCguucgGGGUucaaccggcggGUGGCGCUGCGgGGaCa- -3'
miRNA:   3'- -CCGGa----CCCG-----------CACCGCGACGCgCC-Gcc -5'
14029 5' -65.3 NC_003521.1 + 168565 0.72 0.323488
Target:  5'- gGGCUgcGGGUaagGUGGCgGCUGacccaGCGGCGGc -3'
miRNA:   3'- -CCGGa-CCCG---CACCG-CGACg----CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 239225 0.72 0.326167
Target:  5'- aGGCgCUGGuGgaUGUGGCGCUgcacggccgucagcaGCGaCGGCGGg -3'
miRNA:   3'- -CCG-GACC-C--GCACCGCGA---------------CGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 214428 0.71 0.328187
Target:  5'- cGGCgUGGGUGacGGUGCUGCagaaguugaugacgGCGGCGc -3'
miRNA:   3'- -CCGgACCCGCa-CCGCGACG--------------CGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 72846 0.7 0.380162
Target:  5'- cGGCCUGGG-GcGGCGaCgguagGCaCGGCGGu -3'
miRNA:   3'- -CCGGACCCgCaCCGC-Ga----CGcGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 240073 0.73 0.279265
Target:  5'- uGGCCUccGGCGUGGgGCUugcaCGUGGUGGg -3'
miRNA:   3'- -CCGGAc-CCGCACCgCGAc---GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 31832 0.73 0.266971
Target:  5'- cGGCCcGGGCGccgaaggUGGCGUUGaagaaGaCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGC-------ACCGCGACg----C-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 238462 0.74 0.245304
Target:  5'- cGGCCUcggcGGGCGgGGCGgaGaCGCGGCccaGGg -3'
miRNA:   3'- -CCGGA----CCCGCaCCGCgaC-GCGCCG---CC- -5'
14029 5' -65.3 NC_003521.1 + 214808 0.78 0.129574
Target:  5'- cGCCgucGGGCGccgGGCGCgGCGaCGGCGGu -3'
miRNA:   3'- cCGGa--CCCGCa--CCGCGaCGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 213118 0.78 0.135809
Target:  5'- cGCgCUGGGUGUGGCGUgGUGCGGCc- -3'
miRNA:   3'- cCG-GACCCGCACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 43137 0.75 0.200864
Target:  5'- cGGCgCUGGGCGUggaGGUGCacGCGCuGGUGGc -3'
miRNA:   3'- -CCG-GACCCGCA---CCGCGa-CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 47379 0.75 0.200864
Target:  5'- uGCCgacgaaGGGUcccagGGCGCUGCGCGaGCGGa -3'
miRNA:   3'- cCGGa-----CCCGca---CCGCGACGCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 224420 0.74 0.219684
Target:  5'- cGCC--GGCcaGGCGCUGCGUGGUGGg -3'
miRNA:   3'- cCGGacCCGcaCCGCGACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 135773 0.74 0.22914
Target:  5'- aGGCggugGcGGCaGUGGCGCUGCgggaggaggagcaGCGGCGGa -3'
miRNA:   3'- -CCGga--C-CCG-CACCGCGACG-------------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 137298 0.74 0.239989
Target:  5'- aGCUgcggGuGGCGcGGCuGCUGCGCGGCGa -3'
miRNA:   3'- cCGGa---C-CCGCaCCG-CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 232206 0.74 0.239989
Target:  5'- gGGCCcccgcGGGUgGUGGUgGCUGUGCGGCGu -3'
miRNA:   3'- -CCGGa----CCCG-CACCG-CGACGCGCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.