miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 170950 1.1 0.000726
Target:  5'- uGGCCUGGGCGUGGCGCUGCGCGGCGGc -3'
miRNA:   3'- -CCGGACCCGCACCGCGACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 37531 0.72 0.297604
Target:  5'- cGuCCUGGGgGUGGgcaGCggggGuCGCGGCGGa -3'
miRNA:   3'- cC-GGACCCgCACCg--CGa---C-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 119196 0.72 0.303921
Target:  5'- -aCCaaGGaCGUGGCGCUGCGCcaGGUGGu -3'
miRNA:   3'- ccGGacCC-GCACCGCGACGCG--CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 169941 0.66 0.655279
Target:  5'- uGGCCcuGGUGUGGCgauaugucgucGUUGCucuccuccugggagGCGGCGGc -3'
miRNA:   3'- -CCGGacCCGCACCG-----------CGACG--------------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 37423 0.76 0.171297
Target:  5'- cGGCCUGggaGGCGUGGCcgggaccugagGCgacCGCGGCGGu -3'
miRNA:   3'- -CCGGAC---CCGCACCG-----------CGac-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 76384 0.76 0.171297
Target:  5'- cGGCC-GcGGCcgcgGUGGCGCUGCuagcaccaGCGGCGGu -3'
miRNA:   3'- -CCGGaC-CCG----CACCGCGACG--------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 183795 0.74 0.219684
Target:  5'- uGCCUGGGC--GGCGUguucauccGCGUGGCGGc -3'
miRNA:   3'- cCGGACCCGcaCCGCGa-------CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 196456 0.74 0.23477
Target:  5'- cGGCCUcGGGCGUGGgcCGCagccccaGCGCGucGCGGa -3'
miRNA:   3'- -CCGGA-CCCGCACC--GCGa------CGCGC--CGCC- -5'
14029 5' -65.3 NC_003521.1 + 102959 0.73 0.261837
Target:  5'- aGGCgCUcGGGCGUcGGgGCUcugGCGgGGCGGc -3'
miRNA:   3'- -CCG-GA-CCCGCA-CCgCGA---CGCgCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 140538 0.72 0.291389
Target:  5'- cGGCUccacaaaGGCgGUGGCuGCUGCgGCGGCGGc -3'
miRNA:   3'- -CCGGac-----CCG-CACCG-CGACG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 184143 0.73 0.279265
Target:  5'- uGCCUGGGCGgcuacuGCGaccuggUGCGCGaGCGGg -3'
miRNA:   3'- cCGGACCCGCac----CGCg-----ACGCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 38234 0.74 0.245304
Target:  5'- cGGCCUcggcGGGCGgGGCGgaGaCGCGGCccaGGg -3'
miRNA:   3'- -CCGGA----CCCGCaCCGCgaC-GCGCCG---CC- -5'
14029 5' -65.3 NC_003521.1 + 167722 0.81 0.082302
Target:  5'- uGGCCacggUGGauuGCGUGGCGCUGCGguggcCGGCGGa -3'
miRNA:   3'- -CCGG----ACC---CGCACCGCGACGC-----GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 205675 0.73 0.281657
Target:  5'- aGGCCcgGGcGCGUGGCGCacccgcgcucaguCGCGGCGa -3'
miRNA:   3'- -CCGGa-CC-CGCACCGCGac-----------GCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 21940 0.77 0.141987
Target:  5'- cGGCCUcGGGCuggagcaGUGG-GCgaGCGCGGCGGg -3'
miRNA:   3'- -CCGGA-CCCG-------CACCgCGa-CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 36355 0.74 0.245304
Target:  5'- gGGCUcGGGC-UGGCGUgGCGCGGCu- -3'
miRNA:   3'- -CCGGaCCCGcACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 123666 0.72 0.291389
Target:  5'- aGGCUUGGaGgGagccGGCGCgcugcgGCGUGGCGGu -3'
miRNA:   3'- -CCGGACC-CgCa---CCGCGa-----CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 93902 0.72 0.297604
Target:  5'- gGGCaUGGGCGUGGCuggucGCgGCaaGCGGCGa -3'
miRNA:   3'- -CCGgACCCGCACCG-----CGaCG--CGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 110669 0.77 0.15262
Target:  5'- aGGCCaGGGCGUaGCGCUcgguggcgGCaGCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGCAcCGCGA--------CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 102742 0.75 0.210092
Target:  5'- cGGCCUGGGag-GGCcagcgccucaGCUGUccGCGGCGGu -3'
miRNA:   3'- -CCGGACCCgcaCCG----------CGACG--CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.