miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 101679 0.66 0.619995
Target:  5'- uGGCgUcGGGCGaggGGCagaucuuguccuGUacgcucagcacgaUGCGCGGCGGg -3'
miRNA:   3'- -CCGgA-CCCGCa--CCG------------CG-------------ACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 80007 0.66 0.630212
Target:  5'- gGGCUUGGGC--GGCuuCUGCuGCGGCu- -3'
miRNA:   3'- -CCGGACCCGcaCCGc-GACG-CGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 150680 0.66 0.630212
Target:  5'- cGGCgccgcugcugCUGGGUGc--UGCUGCGCcGGCGGc -3'
miRNA:   3'- -CCG----------GACCCGCaccGCGACGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 101473 0.66 0.611642
Target:  5'- cGCCucguagUGGcGCGUgaGGUGCUcgaGCaGCGGCGGc -3'
miRNA:   3'- cCGG------ACC-CGCA--CCGCGA---CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 78130 0.66 0.630212
Target:  5'- -aCCUuGGUG-GGCGCguuaGCgGCGGCGGc -3'
miRNA:   3'- ccGGAcCCGCaCCGCGa---CG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 54998 0.66 0.619995
Target:  5'- uGGCCgacuuguaGGGCuuaaGGCGCaGCGCcagcgucGGCGGc -3'
miRNA:   3'- -CCGGa-------CCCGca--CCGCGaCGCG-------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 144144 0.66 0.630212
Target:  5'- cGCCUGGGCuccgaGGCGUUGCucuucaagcacGCcGGCGc -3'
miRNA:   3'- cCGGACCCGca---CCGCGACG-----------CG-CCGCc -5'
14029 5' -65.3 NC_003521.1 + 102868 0.66 0.611642
Target:  5'- aGGUCUGGGcCGUgcguagcgaGGCGCagagGCGCaGCa- -3'
miRNA:   3'- -CCGGACCC-GCA---------CCGCGa---CGCGcCGcc -5'
14029 5' -65.3 NC_003521.1 + 115376 0.66 0.630212
Target:  5'- uGGCCaGGGcCGgcauGUGCaggGCGCgGGCGGc -3'
miRNA:   3'- -CCGGaCCC-GCac--CGCGa--CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 134071 0.66 0.610714
Target:  5'- cGCCUGGGCGcccUGGaCGCggagGUGUccauccaggaccuGGUGGc -3'
miRNA:   3'- cCGGACCCGC---ACC-GCGa---CGCG-------------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 38324 0.66 0.639501
Target:  5'- cGGCCaaGGGCGaUGGCGUUuuaggaacguucGC-CGGCGu -3'
miRNA:   3'- -CCGGa-CCCGC-ACCGCGA------------CGcGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 206429 0.66 0.630212
Target:  5'- -uCCaacgGGGCGUGGUGUagcgauugacgUGgGCGGgGGa -3'
miRNA:   3'- ccGGa---CCCGCACCGCG-----------ACgCGCCgCC- -5'
14029 5' -65.3 NC_003521.1 + 46552 0.66 0.630212
Target:  5'- gGGCCUc-GCGccgGGUGCUGaaGCGGUGGu -3'
miRNA:   3'- -CCGGAccCGCa--CCGCGACg-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 28833 0.66 0.611642
Target:  5'- uGUCUGcGGCGccUGGacgacgaGCUGCGgCGGCGcGg -3'
miRNA:   3'- cCGGAC-CCGC--ACCg------CGACGC-GCCGC-C- -5'
14029 5' -65.3 NC_003521.1 + 120902 0.66 0.620923
Target:  5'- uGGUCggGGGCGgcuGCuugcguuugcgGCUGCccGCGGCGGc -3'
miRNA:   3'- -CCGGa-CCCGCac-CG-----------CGACG--CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 126777 0.66 0.611642
Target:  5'- cGGCa--GGCccUGGCGCUGCGCG-UGGu -3'
miRNA:   3'- -CCGgacCCGc-ACCGCGACGCGCcGCC- -5'
14029 5' -65.3 NC_003521.1 + 153090 0.66 0.603299
Target:  5'- gGGCCgGGGCccaccacgccgccgGGCGC-GCGCGaCGGc -3'
miRNA:   3'- -CCGGaCCCGca------------CCGCGaCGCGCcGCC- -5'
14029 5' -65.3 NC_003521.1 + 150464 0.66 0.620923
Target:  5'- uGGUCUGGG-GcGGCGa-GCGCcuGGUGGg -3'
miRNA:   3'- -CCGGACCCgCaCCGCgaCGCG--CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 113740 0.66 0.639501
Target:  5'- cGGgCUGGGCcgccucucgucgGUGGCcCUGCcCGGCa- -3'
miRNA:   3'- -CCgGACCCG------------CACCGcGACGcGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 105931 0.66 0.620923
Target:  5'- cGGUCUGcGUGUGGC-CgGCGCGGauGa -3'
miRNA:   3'- -CCGGACcCGCACCGcGaCGCGCCgcC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.