miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 36355 0.74 0.245304
Target:  5'- gGGCUcGGGC-UGGCGUgGCGCGGCu- -3'
miRNA:   3'- -CCGGaCCCGcACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 102959 0.73 0.261837
Target:  5'- aGGCgCUcGGGCGUcGGgGCUcugGCGgGGCGGc -3'
miRNA:   3'- -CCG-GA-CCCGCA-CCgCGA---CGCgCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 31832 0.73 0.266971
Target:  5'- cGGCCcGGGCGccgaaggUGGCGUUGaagaaGaCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGC-------ACCGCGACg----C-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 39846 0.73 0.279265
Target:  5'- uGGCCUccGGCGUGGgGCUugcaCGUGGUGGg -3'
miRNA:   3'- -CCGGAc-CCGCACCgCGAc---GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 240073 0.73 0.279265
Target:  5'- uGGCCUccGGCGUGGgGCUugcaCGUGGUGGg -3'
miRNA:   3'- -CCGGAc-CCGCACCgCGAc---GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 184143 0.73 0.279265
Target:  5'- uGCCUGGGCGgcuacuGCGaccuggUGCGCGaGCGGg -3'
miRNA:   3'- cCGGACCCGCac----CGCg-----ACGCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 205675 0.73 0.281657
Target:  5'- aGGCCcgGGcGCGUGGCGCacccgcgcucaguCGCGGCGa -3'
miRNA:   3'- -CCGGa-CC-CGCACCGCGac-----------GCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 168417 0.73 0.285276
Target:  5'- uGGCUaGGGCG-GGCgGCaggGcCGCGGCGGc -3'
miRNA:   3'- -CCGGaCCCGCaCCG-CGa--C-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 123666 0.72 0.291389
Target:  5'- aGGCUUGGaGgGagccGGCGCgcugcgGCGUGGCGGu -3'
miRNA:   3'- -CCGGACC-CgCa---CCGCGa-----CGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 140538 0.72 0.291389
Target:  5'- cGGCUccacaaaGGCgGUGGCuGCUGCgGCGGCGGc -3'
miRNA:   3'- -CCGGac-----CCG-CACCG-CGACG-CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 223404 0.72 0.297604
Target:  5'- gGGCC---GUGUGGCGCcccgGCGCGGCGu -3'
miRNA:   3'- -CCGGaccCGCACCGCGa---CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 93902 0.72 0.297604
Target:  5'- gGGCaUGGGCGUGGCuggucGCgGCaaGCGGCGa -3'
miRNA:   3'- -CCGgACCCGCACCG-----CGaCG--CGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 37531 0.72 0.297604
Target:  5'- cGuCCUGGGgGUGGgcaGCggggGuCGCGGCGGa -3'
miRNA:   3'- cC-GGACCCgCACCg--CGa---C-GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 119196 0.72 0.303921
Target:  5'- -aCCaaGGaCGUGGCGCUGCGCcaGGUGGu -3'
miRNA:   3'- ccGGacCC-GCACCGCGACGCG--CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 35813 0.72 0.31034
Target:  5'- cGGCgUGGGCGagaaccUGGCGgUGCGCGcCGa -3'
miRNA:   3'- -CCGgACCCGC------ACCGCgACGCGCcGCc -5'
14029 5' -65.3 NC_003521.1 + 89972 0.72 0.316863
Target:  5'- cGGCCguucgGGGUucaaccggcggGUGGCGCUGCGgGGaCa- -3'
miRNA:   3'- -CCGGa----CCCG-----------CACCGCGACGCgCC-Gcc -5'
14029 5' -65.3 NC_003521.1 + 41630 0.72 0.316863
Target:  5'- uGGUCUgGGGCGUGGCGCc-CGUGGUc- -3'
miRNA:   3'- -CCGGA-CCCGCACCGCGacGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 21769 0.72 0.323488
Target:  5'- -aCCUGGGCGccgUGGCGUgccugucCGUGGCGGu -3'
miRNA:   3'- ccGGACCCGC---ACCGCGac-----GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 167163 0.72 0.323488
Target:  5'- cGCCUcGGGCGUcuuggaGGCGgc-CGCGGCGGa -3'
miRNA:   3'- cCGGA-CCCGCA------CCGCgacGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 168565 0.72 0.323488
Target:  5'- gGGCUgcGGGUaagGUGGCgGCUGacccaGCGGCGGc -3'
miRNA:   3'- -CCGGa-CCCG---CACCG-CGACg----CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.