miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14029 5' -65.3 NC_003521.1 + 240073 0.73 0.279265
Target:  5'- uGGCCUccGGCGUGGgGCUugcaCGUGGUGGg -3'
miRNA:   3'- -CCGGAc-CCGCACCgCGAc---GCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 239225 0.72 0.326167
Target:  5'- aGGCgCUGGuGgaUGUGGCGCUgcacggccgucagcaGCGaCGGCGGg -3'
miRNA:   3'- -CCG-GACC-C--GCACCGCGA---------------CGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 238614 0.68 0.491354
Target:  5'- gGGCCUGGGCGUaGG-GCcgGCcGUccguuccccgaacgGGCGGu -3'
miRNA:   3'- -CCGGACCCGCA-CCgCGa-CG-CG--------------CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 238462 0.74 0.245304
Target:  5'- cGGCCUcggcGGGCGgGGCGgaGaCGCGGCccaGGg -3'
miRNA:   3'- -CCGGA----CCCGCaCCGCgaC-GCGCCG---CC- -5'
14029 5' -65.3 NC_003521.1 + 238217 0.69 0.468178
Target:  5'- aGCCUGGGCGUcGGCaCgGCGuCGaGCGu -3'
miRNA:   3'- cCGGACCCGCA-CCGcGaCGC-GC-CGCc -5'
14029 5' -65.3 NC_003521.1 + 232543 0.66 0.655279
Target:  5'- -uUCUGGGCGaggUGGCcuacuacgggggcuGCUGUGUGGUGa -3'
miRNA:   3'- ccGGACCCGC---ACCG--------------CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 232206 0.74 0.239989
Target:  5'- gGGCCcccgcGGGUgGUGGUgGCUGUGCGGCGu -3'
miRNA:   3'- -CCGGa----CCCG-CACCG-CGACGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 226861 0.7 0.403061
Target:  5'- aGGCCcaucaGGGCGUccagcgagGGCaGCUGCGggggcaccaCGGCGGc -3'
miRNA:   3'- -CCGGa----CCCGCA--------CCG-CGACGC---------GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 224684 0.7 0.403061
Target:  5'- cGUCUuGGCGUGGCGCccGgGCGuGUGGa -3'
miRNA:   3'- cCGGAcCCGCACCGCGa-CgCGC-CGCC- -5'
14029 5' -65.3 NC_003521.1 + 224420 0.74 0.219684
Target:  5'- cGCC--GGCcaGGCGCUGCGUGGUGGg -3'
miRNA:   3'- cCGGacCCGcaCCGCGACGCGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 224078 0.66 0.65806
Target:  5'- cGuCCUccGGCG-GGCGCgcGCGCcGGCGGu -3'
miRNA:   3'- cC-GGAc-CCGCaCCGCGa-CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 223404 0.72 0.297604
Target:  5'- gGGCC---GUGUGGCGCcccgGCGCGGCGu -3'
miRNA:   3'- -CCGGaccCGCACCGCGa---CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 221820 0.69 0.425205
Target:  5'- cGGCg-GGGCG-GGCGUgucucccucgucGCGCGGCGc -3'
miRNA:   3'- -CCGgaCCCGCaCCGCGa-----------CGCGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 218376 0.66 0.639501
Target:  5'- aGCCa-GGCGUGccGCGUgaaGCGCgGGCGGu -3'
miRNA:   3'- cCGGacCCGCAC--CGCGa--CGCG-CCGCC- -5'
14029 5' -65.3 NC_003521.1 + 214808 0.78 0.129574
Target:  5'- cGCCgucGGGCGccgGGCGCgGCGaCGGCGGu -3'
miRNA:   3'- cCGGa--CCCGCa--CCGCGaCGC-GCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 214428 0.71 0.328187
Target:  5'- cGGCgUGGGUGacGGUGCUGCagaaguugaugacgGCGGCGc -3'
miRNA:   3'- -CCGgACCCGCa-CCGCGACG--------------CGCCGCc -5'
14029 5' -65.3 NC_003521.1 + 213118 0.78 0.135809
Target:  5'- cGCgCUGGGUGUGGCGUgGUGCGGCc- -3'
miRNA:   3'- cCG-GACCCGCACCGCGaCGCGCCGcc -5'
14029 5' -65.3 NC_003521.1 + 212067 0.67 0.593123
Target:  5'- cGCUaGGGCgGUGGCGCggccCGCGcGCGu -3'
miRNA:   3'- cCGGaCCCG-CACCGCGac--GCGC-CGCc -5'
14029 5' -65.3 NC_003521.1 + 209041 0.66 0.648786
Target:  5'- cGGCCuucugcgagUGcGGCGacUGGCGCgaccccgaugUGCcggucgagGCGGCGGa -3'
miRNA:   3'- -CCGG---------AC-CCGC--ACCGCG----------ACG--------CGCCGCC- -5'
14029 5' -65.3 NC_003521.1 + 206429 0.66 0.630212
Target:  5'- -uCCaacgGGGCGUGGUGUagcgauugacgUGgGCGGgGGa -3'
miRNA:   3'- ccGGa---CCCGCACCGCG-----------ACgCGCCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.