miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 128324 0.66 0.989774
Target:  5'- aGCGgauaaaggGGUCGuuCuGCGUGAUGCCGa-- -3'
miRNA:   3'- -CGCa-------CCAGUu-GcCGUACUACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 128464 0.79 0.491903
Target:  5'- gGCGgaucacguccaUGGgCAGCGGCGUGAgGCUGUGCg -3'
miRNA:   3'- -CGC-----------ACCaGUUGCCGUACUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 129282 0.71 0.887613
Target:  5'- cCGUGGUCAGCuuguugaggucguGGaacuUGAUGgCGUGCg -3'
miRNA:   3'- cGCACCAGUUG-------------CCgu--ACUACgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 130128 0.68 0.95976
Target:  5'- uGCGUcGUCGGCGGCGcc--GCCGcUGCc -3'
miRNA:   3'- -CGCAcCAGUUGCCGUacuaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 131315 0.7 0.929608
Target:  5'- ----cGUCGGCGGCGUcaccugGCCGUGCa -3'
miRNA:   3'- cgcacCAGUUGCCGUAcua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 137997 0.74 0.775798
Target:  5'- cGCGcaGGUCGAucuCGGCGUcgaGGUGCgCGUGCg -3'
miRNA:   3'- -CGCa-CCAGUU---GCCGUA---CUACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 139756 0.69 0.952264
Target:  5'- cGCGUGc-CGACGGCAgGAUccgGCCGUcgGCg -3'
miRNA:   3'- -CGCACcaGUUGCCGUaCUA---CGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 144194 0.68 0.95976
Target:  5'- cGCGcUGGagAACGGCAaGcUGCagcaGUGCg -3'
miRNA:   3'- -CGC-ACCagUUGCCGUaCuACGg---CACG- -5'
14035 3' -53.6 NC_003521.1 + 144698 0.66 0.989774
Target:  5'- aCGUGGaggCAAC-GCGg---GCCGUGCa -3'
miRNA:   3'- cGCACCa--GUUGcCGUacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 145041 0.75 0.72864
Target:  5'- cGCGUGGcCgAGCGGCAcGAUGaCCGUcuggGCg -3'
miRNA:   3'- -CGCACCaG-UUGCCGUaCUAC-GGCA----CG- -5'
14035 3' -53.6 NC_003521.1 + 147823 0.67 0.981642
Target:  5'- uCGUGcGg-AACuGCAcGGUGCCGUGCa -3'
miRNA:   3'- cGCAC-CagUUGcCGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 149744 0.66 0.989774
Target:  5'- aGUGgcaGGUCuucuGCGGCGaggGcgGCCGcGCg -3'
miRNA:   3'- -CGCa--CCAGu---UGCCGUa--CuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 151398 0.66 0.990993
Target:  5'- uGCGgggacgGGUaggGACGGCGUGuguauGUGCUgcuuGUGCg -3'
miRNA:   3'- -CGCa-----CCAg--UUGCCGUAC-----UACGG----CACG- -5'
14035 3' -53.6 NC_003521.1 + 153346 0.66 0.990876
Target:  5'- aCGUGuUCAGCagcuGGCAgaucuucUGGUGCCG-GCa -3'
miRNA:   3'- cGCACcAGUUG----CCGU-------ACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 153426 0.72 0.844395
Target:  5'- gGCGUGGUCAGCaGCAgccgGUCGcGCu -3'
miRNA:   3'- -CGCACCAGUUGcCGUacuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 154538 0.68 0.95976
Target:  5'- uGCGUGaUCAcCGGCAccacggUGAUcGCCGcGCa -3'
miRNA:   3'- -CGCACcAGUuGCCGU------ACUA-CGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 155401 0.78 0.549625
Target:  5'- uGCGUGGUCAACGaGCGcgccuaccagGA-GCUGUGCg -3'
miRNA:   3'- -CGCACCAGUUGC-CGUa---------CUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 155616 0.69 0.943883
Target:  5'- -gGUGGcgaccgcuguucUCGGCGGCgGUGGUagcagaagcGCCGUGCu -3'
miRNA:   3'- cgCACC------------AGUUGCCG-UACUA---------CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 163816 1.13 0.004681
Target:  5'- gGCGUGGUCAACGGCAUGAUGCCGUGCc -3'
miRNA:   3'- -CGCACCAGUUGCCGUACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 164554 0.67 0.981642
Target:  5'- cGCGaGGUCuc--GCAgGcgGCCGUGCg -3'
miRNA:   3'- -CGCaCCAGuugcCGUaCuaCGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.