miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 105938 0.76 0.639408
Target:  5'- cGUGUGGcCGGCGcGgAUGAUGaCCGUGUg -3'
miRNA:   3'- -CGCACCaGUUGC-CgUACUAC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 106288 0.68 0.972232
Target:  5'- cCGUGGagggCAACaGCAaccaggcgGcgGCCGUGCg -3'
miRNA:   3'- cGCACCa---GUUGcCGUa-------CuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 107749 0.67 0.979554
Target:  5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3'
miRNA:   3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 108451 0.69 0.934596
Target:  5'- cGCG-GGUguGCGGCGUGccGCUGauacccUGCa -3'
miRNA:   3'- -CGCaCCAguUGCCGUACuaCGGC------ACG- -5'
14035 3' -53.6 NC_003521.1 + 111596 0.7 0.907355
Target:  5'- cGCGUGGcCAGCGGCGccgGAcUGCCcaccacGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa--CU-ACGGca----CG- -5'
14035 3' -53.6 NC_003521.1 + 112096 0.66 0.985334
Target:  5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3'
miRNA:   3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 112779 0.67 0.981642
Target:  5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3'
miRNA:   3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 113280 0.72 0.852209
Target:  5'- --cUGGcCGACGGCGUGcUGCCGccGCa -3'
miRNA:   3'- cgcACCaGUUGCCGUACuACGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 113834 0.69 0.956121
Target:  5'- aCGUcGGgCAGCGGCAgcgggGcgGCCG-GCg -3'
miRNA:   3'- cGCA-CCaGUUGCCGUa----CuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 115256 0.67 0.981642
Target:  5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3'
miRNA:   3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5'
14035 3' -53.6 NC_003521.1 + 117273 0.66 0.990993
Target:  5'- cCGccGUCGuCGGcCGUGGUGCCG-GCu -3'
miRNA:   3'- cGCacCAGUuGCC-GUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 118703 0.66 0.990993
Target:  5'- cCGUGuUCAgccGCGGCGaGAcGCCGcUGCa -3'
miRNA:   3'- cGCACcAGU---UGCCGUaCUaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 119262 0.7 0.913262
Target:  5'- cGCGUGGUCAAgauGCAggUGGUGgCCGaGCa -3'
miRNA:   3'- -CGCACCAGUUgc-CGU--ACUAC-GGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 122660 0.67 0.983566
Target:  5'- gGCGUcGUCuGCGGCGguggGGUGgCGUcGCc -3'
miRNA:   3'- -CGCAcCAGuUGCCGUa---CUACgGCA-CG- -5'
14035 3' -53.6 NC_003521.1 + 122727 0.69 0.952264
Target:  5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3'
miRNA:   3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5'
14035 3' -53.6 NC_003521.1 + 123970 0.67 0.979554
Target:  5'- cGCGcaGGUCGucGCGGUcgGcgGCCGUc- -3'
miRNA:   3'- -CGCa-CCAGU--UGCCGuaCuaCGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 124026 0.73 0.811348
Target:  5'- cGCgGUGcGUCAGCGGCugcuUGgcGuuGUGCu -3'
miRNA:   3'- -CG-CAC-CAGUUGCCGu---ACuaCggCACG- -5'
14035 3' -53.6 NC_003521.1 + 126272 0.67 0.981642
Target:  5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3'
miRNA:   3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 127323 0.74 0.766579
Target:  5'- gGCGuUGGUCAGCGGC----UGCCGgucgGCc -3'
miRNA:   3'- -CGC-ACCAGUUGCCGuacuACGGCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 127367 0.66 0.990993
Target:  5'- cCGUGGUgcGCGGCA-GGUG-CGUGa -3'
miRNA:   3'- cGCACCAguUGCCGUaCUACgGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.