miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 107749 0.67 0.979554
Target:  5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3'
miRNA:   3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 126272 0.67 0.981642
Target:  5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3'
miRNA:   3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 164554 0.67 0.981642
Target:  5'- cGCGaGGUCuc--GCAgGcgGCCGUGCg -3'
miRNA:   3'- -CGCaCCAGuugcCGUaCuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 112779 0.67 0.981642
Target:  5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3'
miRNA:   3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 180088 0.67 0.982431
Target:  5'- cGCGUcaccccguccagggaGGgCAGCGGCGUGGUGCgaccCGcGCc -3'
miRNA:   3'- -CGCA---------------CCaGUUGCCGUACUACG----GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 122660 0.67 0.983566
Target:  5'- gGCGUcGUCuGCGGCGguggGGUGgCGUcGCc -3'
miRNA:   3'- -CGCAcCAGuUGCCGUa---CUACgGCA-CG- -5'
14035 3' -53.6 NC_003521.1 + 28370 0.67 0.983566
Target:  5'- gGCcUGGUUGAUGGCGUG--GCaCGUGUc -3'
miRNA:   3'- -CGcACCAGUUGCCGUACuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 17145 0.68 0.963186
Target:  5'- -aGUGGUuccagCAGCGGCGcGAgGCCGagGCg -3'
miRNA:   3'- cgCACCA-----GUUGCCGUaCUaCGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 205348 0.68 0.966403
Target:  5'- ---cGG-CGGCGGCAgcugcGCCGUGCa -3'
miRNA:   3'- cgcaCCaGUUGCCGUacua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 20648 0.68 0.963186
Target:  5'- cGCGcUGGUgGGCGccuaCGUGAUGaCCGUGg -3'
miRNA:   3'- -CGC-ACCAgUUGCc---GUACUAC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 154538 0.68 0.95976
Target:  5'- uGCGUGaUCAcCGGCAccacggUGAUcGCCGcGCa -3'
miRNA:   3'- -CGCACcAGUuGCCGU------ACUA-CGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 214171 0.68 0.969417
Target:  5'- gGCuUGGUCGACgGGCAguucGGUGgcaaCGUGCc -3'
miRNA:   3'- -CGcACCAGUUG-CCGUa---CUACg---GCACG- -5'
14035 3' -53.6 NC_003521.1 + 224434 0.68 0.968534
Target:  5'- uGCGUGGUgGGCGaGCGguccaggugcgucuUGAcgaUGaCCGUGUa -3'
miRNA:   3'- -CGCACCAgUUGC-CGU--------------ACU---AC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 88068 0.68 0.963186
Target:  5'- cGCgGUGGUCGGCGGCGc----CCGUGa -3'
miRNA:   3'- -CG-CACCAGUUGCCGUacuacGGCACg -5'
14035 3' -53.6 NC_003521.1 + 130128 0.68 0.95976
Target:  5'- uGCGUcGUCGGCGGCGcc--GCCGcUGCc -3'
miRNA:   3'- -CGCAcCAGUUGCCGUacuaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 144194 0.68 0.95976
Target:  5'- cGCGcUGGagAACGGCAaGcUGCagcaGUGCg -3'
miRNA:   3'- -CGC-ACCagUUGCCGUaCuACGg---CACG- -5'
14035 3' -53.6 NC_003521.1 + 106288 0.68 0.972232
Target:  5'- cCGUGGagggCAACaGCAaccaggcgGcgGCCGUGCg -3'
miRNA:   3'- cGCACCa---GUUGcCGUa-------CuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 17792 0.69 0.939354
Target:  5'- ---aGGcCGuCGGCGUGcugGCCGUGCg -3'
miRNA:   3'- cgcaCCaGUuGCCGUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 139756 0.69 0.952264
Target:  5'- cGCGUGc-CGACGGCAgGAUccgGCCGUcgGCg -3'
miRNA:   3'- -CGCACcaGUUGCCGUaCUA---CGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 122727 0.69 0.952264
Target:  5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3'
miRNA:   3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.