miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 155401 0.78 0.549625
Target:  5'- uGCGUGGUCAACGaGCGcgccuaccagGA-GCUGUGCg -3'
miRNA:   3'- -CGCACCAGUUGC-CGUa---------CUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 128464 0.79 0.491903
Target:  5'- gGCGgaucacguccaUGGgCAGCGGCGUGAgGCUGUGCg -3'
miRNA:   3'- -CGC-----------ACCaGUUGCCGUACUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 153426 0.72 0.844395
Target:  5'- gGCGUGGUCAGCaGCAgccgGUCGcGCu -3'
miRNA:   3'- -CGCACCAGUUGcCGUacuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 41627 0.72 0.859831
Target:  5'- cCGUGGUCuGgGGCGUGgcGcCCGUGg -3'
miRNA:   3'- cGCACCAGuUgCCGUACuaC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 19153 0.71 0.881486
Target:  5'- gGCGUGGUgAccgagagcACGGCGcUGGUGgccgaCGUGCa -3'
miRNA:   3'- -CGCACCAgU--------UGCCGU-ACUACg----GCACG- -5'
14035 3' -53.6 NC_003521.1 + 59864 0.69 0.952264
Target:  5'- ---cGGUCAACGGCGauGUGCCGc-- -3'
miRNA:   3'- cgcaCCAGUUGCCGUacUACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 53515 0.69 0.952264
Target:  5'- gGCGUcG-CAGCGGCcgAUGGUGCUGUccGCu -3'
miRNA:   3'- -CGCAcCaGUUGCCG--UACUACGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 220513 0.69 0.952264
Target:  5'- aGCGUGGUgGccuccugguGCuGCAUGgcGCCG-GCg -3'
miRNA:   3'- -CGCACCAgU---------UGcCGUACuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 170174 0.69 0.952264
Target:  5'- -gGUGGUCGAcuuCGGagcgGUGGUGCCG-GUg -3'
miRNA:   3'- cgCACCAGUU---GCCg---UACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 86316 0.69 0.948186
Target:  5'- gGCGUGauucuggcacGUCAGCcGgGUGGUgagGCCGUGCa -3'
miRNA:   3'- -CGCAC----------CAGUUGcCgUACUA---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 155616 0.69 0.943883
Target:  5'- -gGUGGcgaccgcuguucUCGGCGGCgGUGGUagcagaagcGCCGUGCu -3'
miRNA:   3'- cgCACC------------AGUUGCCG-UACUA---------CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 10432 0.69 0.943883
Target:  5'- cGCGUG-UCGGCGGUuguccGcgGCaCGUGCg -3'
miRNA:   3'- -CGCACcAGUUGCCGua---CuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 129282 0.71 0.887613
Target:  5'- cCGUGGUCAGCuuguugaggucguGGaacuUGAUGgCGUGCg -3'
miRNA:   3'- cGCACCAGUUG-------------CCgu--ACUACgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 225836 0.7 0.913262
Target:  5'- uUGUGGUCcACGGCGcgcucguggUGGUGCgG-GCa -3'
miRNA:   3'- cGCACCAGuUGCCGU---------ACUACGgCaCG- -5'
14035 3' -53.6 NC_003521.1 + 66365 0.7 0.918941
Target:  5'- cGCGUGGcCGGCGGCGagcagcGAcaccaGCgCGUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa-----CUa----CG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 131315 0.7 0.929608
Target:  5'- ----cGUCGGCGGCGUcaccugGCCGUGCa -3'
miRNA:   3'- cgcacCAGUUGCCGUAcua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 76953 0.69 0.94344
Target:  5'- uGCGUuccagcaugucgcGGcCGAUGcGCGUGAUGCUGgcgGCg -3'
miRNA:   3'- -CGCA-------------CCaGUUGC-CGUACUACGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 196221 0.66 0.992094
Target:  5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3'
miRNA:   3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 198801 0.79 0.510859
Target:  5'- uGCGUGGUgcCGGCGGCGUc-UGUCGUGCc -3'
miRNA:   3'- -CGCACCA--GUUGCCGUAcuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 196952 0.75 0.679471
Target:  5'- aGCGUGGgCGACGGCccggGAgccgGCCGggGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGua--CUa---CGGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.