miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 153346 0.66 0.990876
Target:  5'- aCGUGuUCAGCagcuGGCAgaucuucUGGUGCCG-GCa -3'
miRNA:   3'- cGCACcAGUUG----CCGU-------ACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 217641 0.66 0.988429
Target:  5'- gGCGUGGUCGgggggcAUGGCggGAU-CCGgggGUu -3'
miRNA:   3'- -CGCACCAGU------UGCCGuaCUAcGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 112096 0.66 0.985334
Target:  5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3'
miRNA:   3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 149744 0.66 0.989774
Target:  5'- aGUGgcaGGUCuucuGCGGCGaggGcgGCCGcGCg -3'
miRNA:   3'- -CGCa--CCAGu---UGCCGUa--CuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 117273 0.66 0.990993
Target:  5'- cCGccGUCGuCGGcCGUGGUGCCG-GCu -3'
miRNA:   3'- cGCacCAGUuGCC-GUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 127367 0.66 0.990993
Target:  5'- cCGUGGUgcGCGGCA-GGUG-CGUGa -3'
miRNA:   3'- cGCACCAguUGCCGUaCUACgGCACg -5'
14035 3' -53.6 NC_003521.1 + 226310 0.66 0.98857
Target:  5'- gGCGUGGUgucguugaggaacaaGAUGuGCAUGGUGCgCGcGCc -3'
miRNA:   3'- -CGCACCAg--------------UUGC-CGUACUACG-GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 68676 0.66 0.990993
Target:  5'- aGCGUGGaagaGGCGGCcAUG-UGCCGc-- -3'
miRNA:   3'- -CGCACCag--UUGCCG-UACuACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 43470 0.67 0.983566
Target:  5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3'
miRNA:   3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 126272 0.67 0.981642
Target:  5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3'
miRNA:   3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 147823 0.67 0.981642
Target:  5'- uCGUGcGg-AACuGCAcGGUGCCGUGCa -3'
miRNA:   3'- cGCAC-CagUUGcCGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 85471 0.67 0.977294
Target:  5'- -gGUGGUCGu---CGUGGUGCCgGUGCc -3'
miRNA:   3'- cgCACCAGUugccGUACUACGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 213960 0.67 0.981642
Target:  5'- cGgGUGGgCGcCGGCucgg-GCCGUGCu -3'
miRNA:   3'- -CgCACCaGUuGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 115256 0.67 0.981642
Target:  5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3'
miRNA:   3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5'
14035 3' -53.6 NC_003521.1 + 112779 0.67 0.981642
Target:  5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3'
miRNA:   3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 199664 0.67 0.979554
Target:  5'- --uUGGUCauguagaugGugGGCGUcGAguaGCCGUGCa -3'
miRNA:   3'- cgcACCAG---------UugCCGUA-CUa--CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 123970 0.67 0.979554
Target:  5'- cGCGcaGGUCGucGCGGUcgGcgGCCGUc- -3'
miRNA:   3'- -CGCa-CCAGU--UGCCGuaCuaCGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 107749 0.67 0.979554
Target:  5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3'
miRNA:   3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 20381 0.67 0.977294
Target:  5'- cGUGUGG-CuGCGG-GUGuacGCCGUGCu -3'
miRNA:   3'- -CGCACCaGuUGCCgUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 72728 0.67 0.974856
Target:  5'- cGCGUGuUgGAgGGCAuccgaccggUGGUGCCGcGCu -3'
miRNA:   3'- -CGCACcAgUUgCCGU---------ACUACGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.