Results 1 - 20 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 226367 | 0.66 | 0.992094 |
Target: 5'- cGCG-GGagCGGCGGC-UGAcGCCGccGCa -3' miRNA: 3'- -CGCaCCa-GUUGCCGuACUaCGGCa-CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 117273 | 0.66 | 0.990993 |
Target: 5'- cCGccGUCGuCGGcCGUGGUGCCG-GCu -3' miRNA: 3'- cGCacCAGUuGCC-GUACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 166619 | 0.66 | 0.986952 |
Target: 5'- aCGUGGcagaaGACGGCGUcggGCCGcGCg -3' miRNA: 3'- cGCACCag---UUGCCGUAcuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 90826 | 0.66 | 0.985334 |
Target: 5'- gGCGUcGUCGuGCGGCG-GGUGCgcgccgccCGUGCu -3' miRNA: 3'- -CGCAcCAGU-UGCCGUaCUACG--------GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 196221 | 0.66 | 0.992094 |
Target: 5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3' miRNA: 3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 112096 | 0.66 | 0.985334 |
Target: 5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3' miRNA: 3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 179888 | 0.66 | 0.992094 |
Target: 5'- uCGaUGGUCAugGGCGaacccuUGCCGUa- -3' miRNA: 3'- cGC-ACCAGUugCCGUacu---ACGGCAcg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 84594 | 0.66 | 0.986952 |
Target: 5'- gGUGUGGUCGAccagcuCGGCGUcGGUGaCG-GCc -3' miRNA: 3'- -CGCACCAGUU------GCCGUA-CUACgGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 176823 | 0.66 | 0.986952 |
Target: 5'- gGCGUGGUgAACGGUAaaugGCCcacuugGCa -3' miRNA: 3'- -CGCACCAgUUGCCGUacuaCGGca----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 59157 | 0.66 | 0.992094 |
Target: 5'- -gGUGGaUCAgcuGCGGCAcGgcGCCGcggGCa -3' miRNA: 3'- cgCACC-AGU---UGCCGUaCuaCGGCa--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 153346 | 0.66 | 0.990876 |
Target: 5'- aCGUGuUCAGCagcuGGCAgaucuucUGGUGCCG-GCa -3' miRNA: 3'- cGCACcAGUUG----CCGU-------ACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 127367 | 0.66 | 0.990993 |
Target: 5'- cCGUGGUgcGCGGCA-GGUG-CGUGa -3' miRNA: 3'- cGCACCAguUGCCGUaCUACgGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 149744 | 0.66 | 0.989774 |
Target: 5'- aGUGgcaGGUCuucuGCGGCGaggGcgGCCGcGCg -3' miRNA: 3'- -CGCa--CCAGu---UGCCGUa--CuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 49115 | 0.66 | 0.988429 |
Target: 5'- cGCGUGGUgAccGCGGCGcc--GCUGcUGCg -3' miRNA: 3'- -CGCACCAgU--UGCCGUacuaCGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 232575 | 0.66 | 0.986797 |
Target: 5'- uGUGUGGUgAGCGGggggcgaCAUGcguacGUCGUGCu -3' miRNA: 3'- -CGCACCAgUUGCC-------GUACua---CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 228238 | 0.66 | 0.986952 |
Target: 5'- cGC-UGGUCGugGuGgGUGccGCCGUGg -3' miRNA: 3'- -CGcACCAGUugC-CgUACuaCGGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 68676 | 0.66 | 0.990993 |
Target: 5'- aGCGUGGaagaGGCGGCcAUG-UGCCGc-- -3' miRNA: 3'- -CGCACCag--UUGCCG-UACuACGGCacg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 103799 | 0.66 | 0.989774 |
Target: 5'- cCGUGcUC--CGGCGaGAUGaCCGUGCg -3' miRNA: 3'- cGCACcAGuuGCCGUaCUAC-GGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 226310 | 0.66 | 0.98857 |
Target: 5'- gGCGUGGUgucguugaggaacaaGAUGuGCAUGGUGCgCGcGCc -3' miRNA: 3'- -CGCACCAg--------------UUGC-CGUACUACG-GCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 58829 | 0.66 | 0.988429 |
Target: 5'- cGCGUGG-CGGCcgugacguuacuGGCGcgGAUGCCcaGCa -3' miRNA: 3'- -CGCACCaGUUG------------CCGUa-CUACGGcaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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