miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 10432 0.69 0.943883
Target:  5'- cGCGUG-UCGGCGGUuguccGcgGCaCGUGCg -3'
miRNA:   3'- -CGCACcAGUUGCCGua---CuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 153426 0.72 0.844395
Target:  5'- gGCGUGGUCAGCaGCAgccgGUCGcGCu -3'
miRNA:   3'- -CGCACCAGUUGcCGUacuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 41627 0.72 0.859831
Target:  5'- cCGUGGUCuGgGGCGUGgcGcCCGUGg -3'
miRNA:   3'- cGCACCAGuUgCCGUACuaC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 19153 0.71 0.881486
Target:  5'- gGCGUGGUgAccgagagcACGGCGcUGGUGgccgaCGUGCa -3'
miRNA:   3'- -CGCACCAgU--------UGCCGU-ACUACg----GCACG- -5'
14035 3' -53.6 NC_003521.1 + 129282 0.71 0.887613
Target:  5'- cCGUGGUCAGCuuguugaggucguGGaacuUGAUGgCGUGCg -3'
miRNA:   3'- cGCACCAGUUG-------------CCgu--ACUACgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 225836 0.7 0.913262
Target:  5'- uUGUGGUCcACGGCGcgcucguggUGGUGCgG-GCa -3'
miRNA:   3'- cGCACCAGuUGCCGU---------ACUACGgCaCG- -5'
14035 3' -53.6 NC_003521.1 + 66365 0.7 0.918941
Target:  5'- cGCGUGGcCGGCGGCGagcagcGAcaccaGCgCGUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa-----CUa----CG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 131315 0.7 0.929608
Target:  5'- ----cGUCGGCGGCGUcaccugGCCGUGCa -3'
miRNA:   3'- cgcacCAGUUGCCGUAcua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 76953 0.69 0.94344
Target:  5'- uGCGUuccagcaugucgcGGcCGAUGcGCGUGAUGCUGgcgGCg -3'
miRNA:   3'- -CGCA-------------CCaGUUGC-CGUACUACGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 124026 0.73 0.811348
Target:  5'- cGCgGUGcGUCAGCGGCugcuUGgcGuuGUGCu -3'
miRNA:   3'- -CG-CAC-CAGUUGCCGu---ACuaCggCACG- -5'
14035 3' -53.6 NC_003521.1 + 31700 0.73 0.793854
Target:  5'- -aGUGGggCGGCGGCAgcauGUGCgCGUGCu -3'
miRNA:   3'- cgCACCa-GUUGCCGUac--UACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 137997 0.74 0.775798
Target:  5'- cGCGcaGGUCGAucuCGGCGUcgaGGUGCgCGUGCg -3'
miRNA:   3'- -CGCa-CCAGUU---GCCGUA---CUACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 155401 0.78 0.549625
Target:  5'- uGCGUGGUCAACGaGCGcgccuaccagGA-GCUGUGCg -3'
miRNA:   3'- -CGCACCAGUUGC-CGUa---------CUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 105938 0.76 0.639408
Target:  5'- cGUGUGGcCGGCGcGgAUGAUGaCCGUGUg -3'
miRNA:   3'- -CGCACCaGUUGC-CgUACUAC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 228740 0.75 0.689414
Target:  5'- uGCGUGGUgagCAGCGGCGUGcgcaucuUGUCG-GCg -3'
miRNA:   3'- -CGCACCA---GUUGCCGUACu------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 145041 0.75 0.72864
Target:  5'- cGCGUGGcCgAGCGGCAcGAUGaCCGUcuggGCg -3'
miRNA:   3'- -CGCACCaG-UUGCCGUaCUAC-GGCA----CG- -5'
14035 3' -53.6 NC_003521.1 + 217392 0.74 0.751594
Target:  5'- cCGUGGgCAccgccaggcugagcgGCGGCAUGAaGCCgGUGCa -3'
miRNA:   3'- cGCACCaGU---------------UGCCGUACUaCGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 127323 0.74 0.766579
Target:  5'- gGCGuUGGUCAGCGGC----UGCCGgucgGCc -3'
miRNA:   3'- -CGC-ACCAGUUGCCGuacuACGGCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 97 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 240646 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.