miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 163816 1.13 0.004681
Target:  5'- gGCGUGGUCAACGGCAUGAUGCCGUGCc -3'
miRNA:   3'- -CGCACCAGUUGCCGUACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 98218 0.7 0.918941
Target:  5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3'
miRNA:   3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 205774 0.7 0.92439
Target:  5'- uGUGUGGUgGcgccgcACGGCAUGAg--CGUGCc -3'
miRNA:   3'- -CGCACCAgU------UGCCGUACUacgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 196221 0.66 0.992094
Target:  5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3'
miRNA:   3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 46181 0.74 0.757245
Target:  5'- -aGUGGUgAugGGCugcacggugcUGGUGUCGUGCg -3'
miRNA:   3'- cgCACCAgUugCCGu---------ACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 40419 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 18319 0.73 0.784892
Target:  5'- uCGUGccCAGCGGCGUGGUGCUGUu- -3'
miRNA:   3'- cGCACcaGUUGCCGUACUACGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 87277 0.73 0.811348
Target:  5'- cGCGUGGcCAACGGgccCGaGGUGCgCGUGUu -3'
miRNA:   3'- -CGCACCaGUUGCC---GUaCUACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 203335 0.72 0.867255
Target:  5'- aGCGUGG-CGAUGGg--GGUGCCcUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCguaCUACGGcACG- -5'
14035 3' -53.6 NC_003521.1 + 119262 0.7 0.913262
Target:  5'- cGCGUGGUCAAgauGCAggUGGUGgCCGaGCa -3'
miRNA:   3'- -CGCACCAGUUgc-CGU--ACUAC-GGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 196392 0.71 0.894863
Target:  5'- uGCGUGGUgaagggCGGCGGCAgguagagcagguUGuagGCCGUGa -3'
miRNA:   3'- -CGCACCA------GUUGCCGU------------ACua-CGGCACg -5'
14035 3' -53.6 NC_003521.1 + 113280 0.72 0.852209
Target:  5'- --cUGGcCGACGGCGUGcUGCCGccGCa -3'
miRNA:   3'- cgcACCaGUUGCCGUACuACGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 198801 0.79 0.510859
Target:  5'- uGCGUGGUgcCGGCGGCGUc-UGUCGUGCc -3'
miRNA:   3'- -CGCACCA--GUUGCCGUAcuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 111596 0.7 0.907355
Target:  5'- cGCGUGGcCAGCGGCGccgGAcUGCCcaccacGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa--CU-ACGGca----CG- -5'
14035 3' -53.6 NC_003521.1 + 196952 0.75 0.679471
Target:  5'- aGCGUGGgCGACGGCccggGAgccgGCCGggGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGua--CUa---CGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 68044 0.72 0.827388
Target:  5'- gGCGUGGUCcGCGGCgcccccgGUGGcagccagaaUGCCGgGCc -3'
miRNA:   3'- -CGCACCAGuUGCCG-------UACU---------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 33908 0.7 0.907355
Target:  5'- uGCaUGGUCAacGCGGUgaucuucacaugGUGcUGCUGUGCg -3'
miRNA:   3'- -CGcACCAGU--UGCCG------------UACuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 22353 0.7 0.918941
Target:  5'- cCGgGGcCAcugcgcccACGGCGUGGUGCCG-GCc -3'
miRNA:   3'- cGCaCCaGU--------UGCCGUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 172072 0.75 0.689414
Target:  5'- uGCGUcaGGaccgucagCGGCGGCGUGAUGaaguCCGUGCg -3'
miRNA:   3'- -CGCA--CCa-------GUUGCCGUACUAC----GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 210429 0.74 0.775798
Target:  5'- gGCGUGGgcggCGACGGCAgcGUaCUGUGCu -3'
miRNA:   3'- -CGCACCa---GUUGCCGUacUAcGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.