miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 17792 0.69 0.939354
Target:  5'- ---aGGcCGuCGGCGUGcugGCCGUGCg -3'
miRNA:   3'- cgcaCCaGUuGCCGUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 205774 0.7 0.92439
Target:  5'- uGUGUGGUgGcgccgcACGGCAUGAg--CGUGCc -3'
miRNA:   3'- -CGCACCAgU------UGCCGUACUacgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 113280 0.72 0.852209
Target:  5'- --cUGGcCGACGGCGUGcUGCCGccGCa -3'
miRNA:   3'- cgcACCaGUUGCCGUACuACGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 172072 0.75 0.689414
Target:  5'- uGCGUcaGGaccgucagCGGCGGCGUGAUGaaguCCGUGCg -3'
miRNA:   3'- -CGCA--CCa-------GUUGCCGUACUAC----GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 106288 0.68 0.972232
Target:  5'- cCGUGGagggCAACaGCAaccaggcgGcgGCCGUGCg -3'
miRNA:   3'- cGCACCa---GUUGcCGUa-------CuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 139756 0.69 0.952264
Target:  5'- cGCGUGc-CGACGGCAgGAUccgGCCGUcgGCg -3'
miRNA:   3'- -CGCACcaGUUGCCGUaCUA---CGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 98218 0.7 0.918941
Target:  5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3'
miRNA:   3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 196952 0.75 0.679471
Target:  5'- aGCGUGGgCGACGGCccggGAgccgGCCGggGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGua--CUa---CGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 122727 0.69 0.952264
Target:  5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3'
miRNA:   3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5'
14035 3' -53.6 NC_003521.1 + 198801 0.79 0.510859
Target:  5'- uGCGUGGUgcCGGCGGCGUc-UGUCGUGCc -3'
miRNA:   3'- -CGCACCA--GUUGCCGUAcuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 22353 0.7 0.918941
Target:  5'- cCGgGGcCAcugcgcccACGGCGUGGUGCCG-GCc -3'
miRNA:   3'- cGCaCCaGU--------UGCCGUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 183973 0.69 0.939354
Target:  5'- cCGUGGgCuuCGaCAaGAUGCCGUGCu -3'
miRNA:   3'- cGCACCaGuuGCcGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 111596 0.7 0.907355
Target:  5'- cGCGUGGcCAGCGGCGccgGAcUGCCcaccacGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa--CU-ACGGca----CG- -5'
14035 3' -53.6 NC_003521.1 + 203335 0.72 0.867255
Target:  5'- aGCGUGG-CGAUGGg--GGUGCCcUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCguaCUACGGcACG- -5'
14035 3' -53.6 NC_003521.1 + 18319 0.73 0.784892
Target:  5'- uCGUGccCAGCGGCGUGGUGCUGUu- -3'
miRNA:   3'- cGCACcaGUUGCCGUACUACGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 46181 0.74 0.757245
Target:  5'- -aGUGGUgAugGGCugcacggugcUGGUGUCGUGCg -3'
miRNA:   3'- cgCACCAgUugCCGu---------ACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 107749 0.67 0.979554
Target:  5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3'
miRNA:   3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 72728 0.67 0.974856
Target:  5'- cGCGUGuUgGAgGGCAuccgaccggUGGUGCCGcGCu -3'
miRNA:   3'- -CGCACcAgUUgCCGU---------ACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 17145 0.68 0.963186
Target:  5'- -aGUGGUuccagCAGCGGCGcGAgGCCGagGCg -3'
miRNA:   3'- cgCACCA-----GUUGCCGUaCUaCGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 113834 0.69 0.956121
Target:  5'- aCGUcGGgCAGCGGCAgcgggGcgGCCG-GCg -3'
miRNA:   3'- cGCA-CCaGUUGCCGUa----CuaCGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.