miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 124026 0.73 0.811348
Target:  5'- cGCgGUGcGUCAGCGGCugcuUGgcGuuGUGCu -3'
miRNA:   3'- -CG-CAC-CAGUUGCCGu---ACuaCggCACG- -5'
14035 3' -53.6 NC_003521.1 + 68044 0.72 0.827388
Target:  5'- gGCGUGGUCcGCGGCgcccccgGUGGcagccagaaUGCCGgGCc -3'
miRNA:   3'- -CGCACCAGuUGCCG-------UACU---------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 153426 0.72 0.844395
Target:  5'- gGCGUGGUCAGCaGCAgccgGUCGcGCu -3'
miRNA:   3'- -CGCACCAGUUGcCGUacuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 113280 0.72 0.852209
Target:  5'- --cUGGcCGACGGCGUGcUGCCGccGCa -3'
miRNA:   3'- cgcACCaGUUGCCGUACuACGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 41627 0.72 0.859831
Target:  5'- cCGUGGUCuGgGGCGUGgcGcCCGUGg -3'
miRNA:   3'- cGCACCAGuUgCCGUACuaC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 203335 0.72 0.867255
Target:  5'- aGCGUGG-CGAUGGg--GGUGCCcUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCguaCUACGGcACG- -5'
14035 3' -53.6 NC_003521.1 + 19153 0.71 0.881486
Target:  5'- gGCGUGGUgAccgagagcACGGCGcUGGUGgccgaCGUGCa -3'
miRNA:   3'- -CGCACCAgU--------UGCCGU-ACUACg----GCACG- -5'
14035 3' -53.6 NC_003521.1 + 129282 0.71 0.887613
Target:  5'- cCGUGGUCAGCuuguugaggucguGGaacuUGAUGgCGUGCg -3'
miRNA:   3'- cGCACCAGUUG-------------CCgu--ACUACgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 196392 0.71 0.894863
Target:  5'- uGCGUGGUgaagggCGGCGGCAgguagagcagguUGuagGCCGUGa -3'
miRNA:   3'- -CGCACCA------GUUGCCGU------------ACua-CGGCACg -5'
14035 3' -53.6 NC_003521.1 + 28485 0.71 0.894863
Target:  5'- cGgGUGGUgAugGGCGUGAccGUCGgGCu -3'
miRNA:   3'- -CgCACCAgUugCCGUACUa-CGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 111596 0.7 0.907355
Target:  5'- cGCGUGGcCAGCGGCGccgGAcUGCCcaccacGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa--CU-ACGGca----CG- -5'
14035 3' -53.6 NC_003521.1 + 33908 0.7 0.907355
Target:  5'- uGCaUGGUCAacGCGGUgaucuucacaugGUGcUGCUGUGCg -3'
miRNA:   3'- -CGcACCAGU--UGCCG------------UACuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 119262 0.7 0.913262
Target:  5'- cGCGUGGUCAAgauGCAggUGGUGgCCGaGCa -3'
miRNA:   3'- -CGCACCAGUUgc-CGU--ACUAC-GGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 225836 0.7 0.913262
Target:  5'- uUGUGGUCcACGGCGcgcucguggUGGUGCgG-GCa -3'
miRNA:   3'- cGCACCAGuUGCCGU---------ACUACGgCaCG- -5'
14035 3' -53.6 NC_003521.1 + 98218 0.7 0.918941
Target:  5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3'
miRNA:   3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 22353 0.7 0.918941
Target:  5'- cCGgGGcCAcugcgcccACGGCGUGGUGCCG-GCc -3'
miRNA:   3'- cGCaCCaGU--------UGCCGUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 66365 0.7 0.918941
Target:  5'- cGCGUGGcCGGCGGCGagcagcGAcaccaGCgCGUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa-----CUa----CG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 205774 0.7 0.92439
Target:  5'- uGUGUGGUgGcgccgcACGGCAUGAg--CGUGCc -3'
miRNA:   3'- -CGCACCAgU------UGCCGUACUacgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 131315 0.7 0.929608
Target:  5'- ----cGUCGGCGGCGUcaccugGCCGUGCa -3'
miRNA:   3'- cgcacCAGUUGCCGUAcua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 108451 0.69 0.934596
Target:  5'- cGCG-GGUguGCGGCGUGccGCUGauacccUGCa -3'
miRNA:   3'- -CGCaCCAguUGCCGUACuaCGGC------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.