miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 58829 0.66 0.988429
Target:  5'- cGCGUGG-CGGCcgugacguuacuGGCGcgGAUGCCcaGCa -3'
miRNA:   3'- -CGCACCaGUUG------------CCGUa-CUACGGcaCG- -5'
14035 3' -53.6 NC_003521.1 + 59157 0.66 0.992094
Target:  5'- -gGUGGaUCAgcuGCGGCAcGgcGCCGcggGCa -3'
miRNA:   3'- cgCACC-AGU---UGCCGUaCuaCGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 59864 0.69 0.952264
Target:  5'- ---cGGUCAACGGCGauGUGCCGc-- -3'
miRNA:   3'- cgcaCCAGUUGCCGUacUACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 66365 0.7 0.918941
Target:  5'- cGCGUGGcCGGCGGCGagcagcGAcaccaGCgCGUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGUa-----CUa----CG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 68044 0.72 0.827388
Target:  5'- gGCGUGGUCcGCGGCgcccccgGUGGcagccagaaUGCCGgGCc -3'
miRNA:   3'- -CGCACCAGuUGCCG-------UACU---------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 68386 0.67 0.977294
Target:  5'- aGCGaGGUgGACGcCGUGAgaUGCCGgcuggGCa -3'
miRNA:   3'- -CGCaCCAgUUGCcGUACU--ACGGCa----CG- -5'
14035 3' -53.6 NC_003521.1 + 68676 0.66 0.990993
Target:  5'- aGCGUGGaagaGGCGGCcAUG-UGCCGc-- -3'
miRNA:   3'- -CGCACCag--UUGCCG-UACuACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 72728 0.67 0.974856
Target:  5'- cGCGUGuUgGAgGGCAuccgaccggUGGUGCCGcGCu -3'
miRNA:   3'- -CGCACcAgUUgCCGU---------ACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 76953 0.69 0.94344
Target:  5'- uGCGUuccagcaugucgcGGcCGAUGcGCGUGAUGCUGgcgGCg -3'
miRNA:   3'- -CGCA-------------CCaGUUGC-CGUACUACGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 84594 0.66 0.986952
Target:  5'- gGUGUGGUCGAccagcuCGGCGUcGGUGaCG-GCc -3'
miRNA:   3'- -CGCACCAGUU------GCCGUA-CUACgGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 85471 0.67 0.977294
Target:  5'- -gGUGGUCGu---CGUGGUGCCgGUGCc -3'
miRNA:   3'- cgCACCAGUugccGUACUACGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 86316 0.69 0.948186
Target:  5'- gGCGUGauucuggcacGUCAGCcGgGUGGUgagGCCGUGCa -3'
miRNA:   3'- -CGCAC----------CAGUUGcCgUACUA---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 87277 0.73 0.811348
Target:  5'- cGCGUGGcCAACGGgccCGaGGUGCgCGUGUu -3'
miRNA:   3'- -CGCACCaGUUGCC---GUaCUACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 88068 0.68 0.963186
Target:  5'- cGCgGUGGUCGGCGGCGc----CCGUGa -3'
miRNA:   3'- -CG-CACCAGUUGCCGUacuacGGCACg -5'
14035 3' -53.6 NC_003521.1 + 90826 0.66 0.985334
Target:  5'- gGCGUcGUCGuGCGGCG-GGUGCgcgccgccCGUGCu -3'
miRNA:   3'- -CGCAcCAGU-UGCCGUaCUACG--------GCACG- -5'
14035 3' -53.6 NC_003521.1 + 93064 0.66 0.989774
Target:  5'- cCGUGGUgGugGcCAUGG-GCCuGUGCu -3'
miRNA:   3'- cGCACCAgUugCcGUACUaCGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 97047 0.69 0.943883
Target:  5'- aCGU--UCAugGGCGUGAUGUCGaagugGCa -3'
miRNA:   3'- cGCAccAGUugCCGUACUACGGCa----CG- -5'
14035 3' -53.6 NC_003521.1 + 98218 0.7 0.918941
Target:  5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3'
miRNA:   3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5'
14035 3' -53.6 NC_003521.1 + 101054 0.67 0.983566
Target:  5'- gGCGgccGcCGACGGCcgGAuccUGCCGUcgGCa -3'
miRNA:   3'- -CGCac-CaGUUGCCGuaCU---ACGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 103799 0.66 0.989774
Target:  5'- cCGUGcUC--CGGCGaGAUGaCCGUGCg -3'
miRNA:   3'- cGCACcAGuuGCCGUaCUAC-GGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.