miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 196952 0.75 0.679471
Target:  5'- aGCGUGGgCGACGGCccggGAgccgGCCGggGCg -3'
miRNA:   3'- -CGCACCaGUUGCCGua--CUa---CGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 196464 0.69 0.952264
Target:  5'- gGCGUGGgccgCAGCcccagcGCGUcgcgGAUGCgGUGCa -3'
miRNA:   3'- -CGCACCa---GUUGc-----CGUA----CUACGgCACG- -5'
14035 3' -53.6 NC_003521.1 + 196392 0.71 0.894863
Target:  5'- uGCGUGGUgaagggCGGCGGCAgguagagcagguUGuagGCCGUGa -3'
miRNA:   3'- -CGCACCA------GUUGCCGU------------ACua-CGGCACg -5'
14035 3' -53.6 NC_003521.1 + 196221 0.66 0.992094
Target:  5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3'
miRNA:   3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 184127 0.69 0.956121
Target:  5'- uGCGcGGccgaGACGGCGUGuUGaUCGUGCa -3'
miRNA:   3'- -CGCaCCag--UUGCCGUACuAC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 183973 0.69 0.939354
Target:  5'- cCGUGGgCuuCGaCAaGAUGCCGUGCu -3'
miRNA:   3'- cGCACCaGuuGCcGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 180088 0.67 0.982431
Target:  5'- cGCGUcaccccguccagggaGGgCAGCGGCGUGGUGCgaccCGcGCc -3'
miRNA:   3'- -CGCA---------------CCaGUUGCCGUACUACG----GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 179888 0.66 0.992094
Target:  5'- uCGaUGGUCAugGGCGaacccuUGCCGUa- -3'
miRNA:   3'- cGC-ACCAGUugCCGUacu---ACGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 178640 0.67 0.974856
Target:  5'- uGCGUcGUUGGCGGUc-GAUGCCGUcuugGCg -3'
miRNA:   3'- -CGCAcCAGUUGCCGuaCUACGGCA----CG- -5'
14035 3' -53.6 NC_003521.1 + 177525 0.69 0.939354
Target:  5'- -gGUGGUUGAUGGCGUGGaucagcaGCUGcUGCa -3'
miRNA:   3'- cgCACCAGUUGCCGUACUa------CGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 176823 0.66 0.986952
Target:  5'- gGCGUGGUgAACGGUAaaugGCCcacuugGCa -3'
miRNA:   3'- -CGCACCAgUUGCCGUacuaCGGca----CG- -5'
14035 3' -53.6 NC_003521.1 + 172072 0.75 0.689414
Target:  5'- uGCGUcaGGaccgucagCGGCGGCGUGAUGaaguCCGUGCg -3'
miRNA:   3'- -CGCA--CCa-------GUUGCCGUACUAC----GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 170174 0.69 0.952264
Target:  5'- -gGUGGUCGAcuuCGGagcgGUGGUGCCG-GUg -3'
miRNA:   3'- cgCACCAGUU---GCCg---UACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 167041 0.66 0.987559
Target:  5'- aGCucgGG-CAGCGGCGUGGcgcucaugacgccggUGCCG-GCc -3'
miRNA:   3'- -CGca-CCaGUUGCCGUACU---------------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 166619 0.66 0.986952
Target:  5'- aCGUGGcagaaGACGGCGUcggGCCGcGCg -3'
miRNA:   3'- cGCACCag---UUGCCGUAcuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 165611 0.66 0.992094
Target:  5'- uCGUGGUUGGCGGCGUGcagaAUGuaGUa- -3'
miRNA:   3'- cGCACCAGUUGCCGUAC----UACggCAcg -5'
14035 3' -53.6 NC_003521.1 + 164554 0.67 0.981642
Target:  5'- cGCGaGGUCuc--GCAgGcgGCCGUGCg -3'
miRNA:   3'- -CGCaCCAGuugcCGUaCuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 163816 1.13 0.004681
Target:  5'- gGCGUGGUCAACGGCAUGAUGCCGUGCc -3'
miRNA:   3'- -CGCACCAGUUGCCGUACUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 155616 0.69 0.943883
Target:  5'- -gGUGGcgaccgcuguucUCGGCGGCgGUGGUagcagaagcGCCGUGCu -3'
miRNA:   3'- cgCACC------------AGUUGCCG-UACUA---------CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 155401 0.78 0.549625
Target:  5'- uGCGUGGUCAACGaGCGcgccuaccagGA-GCUGUGCg -3'
miRNA:   3'- -CGCACCAGUUGC-CGUa---------CUaCGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.