miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 240646 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 232575 0.66 0.986797
Target:  5'- uGUGUGGUgAGCGGggggcgaCAUGcguacGUCGUGCu -3'
miRNA:   3'- -CGCACCAgUUGCC-------GUACua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 228740 0.75 0.689414
Target:  5'- uGCGUGGUgagCAGCGGCGUGcgcaucuUGUCG-GCg -3'
miRNA:   3'- -CGCACCA---GUUGCCGUACu------ACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 228238 0.66 0.986952
Target:  5'- cGC-UGGUCGugGuGgGUGccGCCGUGg -3'
miRNA:   3'- -CGcACCAGUugC-CgUACuaCGGCACg -5'
14035 3' -53.6 NC_003521.1 + 226367 0.66 0.992094
Target:  5'- cGCG-GGagCGGCGGC-UGAcGCCGccGCa -3'
miRNA:   3'- -CGCaCCa-GUUGCCGuACUaCGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 226310 0.66 0.98857
Target:  5'- gGCGUGGUgucguugaggaacaaGAUGuGCAUGGUGCgCGcGCc -3'
miRNA:   3'- -CGCACCAg--------------UUGC-CGUACUACG-GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 225836 0.7 0.913262
Target:  5'- uUGUGGUCcACGGCGcgcucguggUGGUGCgG-GCa -3'
miRNA:   3'- cGCACCAGuUGCCGU---------ACUACGgCaCG- -5'
14035 3' -53.6 NC_003521.1 + 224434 0.68 0.968534
Target:  5'- uGCGUGGUgGGCGaGCGguccaggugcgucuUGAcgaUGaCCGUGUa -3'
miRNA:   3'- -CGCACCAgUUGC-CGU--------------ACU---AC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 220513 0.69 0.952264
Target:  5'- aGCGUGGUgGccuccugguGCuGCAUGgcGCCG-GCg -3'
miRNA:   3'- -CGCACCAgU---------UGcCGUACuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 218181 0.69 0.956121
Target:  5'- cCGUGGUCuaaGACGuaCAUGGUGCgGUGg -3'
miRNA:   3'- cGCACCAG---UUGCc-GUACUACGgCACg -5'
14035 3' -53.6 NC_003521.1 + 217641 0.66 0.988429
Target:  5'- gGCGUGGUCGgggggcAUGGCggGAU-CCGgggGUu -3'
miRNA:   3'- -CGCACCAGU------UGCCGuaCUAcGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 217392 0.74 0.751594
Target:  5'- cCGUGGgCAccgccaggcugagcgGCGGCAUGAaGCCgGUGCa -3'
miRNA:   3'- cGCACCaGU---------------UGCCGUACUaCGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 214171 0.68 0.969417
Target:  5'- gGCuUGGUCGACgGGCAguucGGUGgcaaCGUGCc -3'
miRNA:   3'- -CGcACCAGUUG-CCGUa---CUACg---GCACG- -5'
14035 3' -53.6 NC_003521.1 + 213960 0.67 0.981642
Target:  5'- cGgGUGGgCGcCGGCucgg-GCCGUGCu -3'
miRNA:   3'- -CgCACCaGUuGCCGuacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 210429 0.74 0.775798
Target:  5'- gGCGUGGgcggCGACGGCAgcGUaCUGUGCu -3'
miRNA:   3'- -CGCACCa---GUUGCCGUacUAcGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 205774 0.7 0.92439
Target:  5'- uGUGUGGUgGcgccgcACGGCAUGAg--CGUGCc -3'
miRNA:   3'- -CGCACCAgU------UGCCGUACUacgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 205348 0.68 0.966403
Target:  5'- ---cGG-CGGCGGCAgcugcGCCGUGCa -3'
miRNA:   3'- cgcaCCaGUUGCCGUacua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 203335 0.72 0.867255
Target:  5'- aGCGUGG-CGAUGGg--GGUGCCcUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCguaCUACGGcACG- -5'
14035 3' -53.6 NC_003521.1 + 199664 0.67 0.979554
Target:  5'- --uUGGUCauguagaugGugGGCGUcGAguaGCCGUGCa -3'
miRNA:   3'- cgcACCAG---------UugCCGUA-CUa--CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 198801 0.79 0.510859
Target:  5'- uGCGUGGUgcCGGCGGCGUc-UGUCGUGCc -3'
miRNA:   3'- -CGCACCA--GUUGCCGUAcuACGGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.