miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 113834 0.69 0.956121
Target:  5'- aCGUcGGgCAGCGGCAgcgggGcgGCCG-GCg -3'
miRNA:   3'- cGCA-CCaGUUGCCGUa----CuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 196464 0.69 0.952264
Target:  5'- gGCGUGGgccgCAGCcccagcGCGUcgcgGAUGCgGUGCa -3'
miRNA:   3'- -CGCACCa---GUUGc-----CGUA----CUACGgCACG- -5'
14035 3' -53.6 NC_003521.1 + 170174 0.69 0.952264
Target:  5'- -gGUGGUCGAcuuCGGagcgGUGGUGCCG-GUg -3'
miRNA:   3'- cgCACCAGUU---GCCg---UACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 220513 0.69 0.952264
Target:  5'- aGCGUGGUgGccuccugguGCuGCAUGgcGCCG-GCg -3'
miRNA:   3'- -CGCACCAgU---------UGcCGUACuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 53515 0.69 0.952264
Target:  5'- gGCGUcG-CAGCGGCcgAUGGUGCUGUccGCu -3'
miRNA:   3'- -CGCAcCaGUUGCCG--UACUACGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 122727 0.69 0.952264
Target:  5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3'
miRNA:   3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5'
14035 3' -53.6 NC_003521.1 + 139756 0.69 0.952264
Target:  5'- cGCGUGc-CGACGGCAgGAUccgGCCGUcgGCg -3'
miRNA:   3'- -CGCACcaGUUGCCGUaCUA---CGGCA--CG- -5'
14035 3' -53.6 NC_003521.1 + 59864 0.69 0.952264
Target:  5'- ---cGGUCAACGGCGauGUGCCGc-- -3'
miRNA:   3'- cgcaCCAGUUGCCGUacUACGGCacg -5'
14035 3' -53.6 NC_003521.1 + 86316 0.69 0.948186
Target:  5'- gGCGUGauucuggcacGUCAGCcGgGUGGUgagGCCGUGCa -3'
miRNA:   3'- -CGCAC----------CAGUUGcCgUACUA---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 10432 0.69 0.943883
Target:  5'- cGCGUG-UCGGCGGUuguccGcgGCaCGUGCg -3'
miRNA:   3'- -CGCACcAGUUGCCGua---CuaCG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 155616 0.69 0.943883
Target:  5'- -gGUGGcgaccgcuguucUCGGCGGCgGUGGUagcagaagcGCCGUGCu -3'
miRNA:   3'- cgCACC------------AGUUGCCG-UACUA---------CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 97047 0.69 0.943883
Target:  5'- aCGU--UCAugGGCGUGAUGUCGaagugGCa -3'
miRNA:   3'- cGCAccAGUugCCGUACUACGGCa----CG- -5'
14035 3' -53.6 NC_003521.1 + 76953 0.69 0.94344
Target:  5'- uGCGUuccagcaugucgcGGcCGAUGcGCGUGAUGCUGgcgGCg -3'
miRNA:   3'- -CGCA-------------CCaGUUGC-CGUACUACGGCa--CG- -5'
14035 3' -53.6 NC_003521.1 + 183973 0.69 0.939354
Target:  5'- cCGUGGgCuuCGaCAaGAUGCCGUGCu -3'
miRNA:   3'- cGCACCaGuuGCcGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 17792 0.69 0.939354
Target:  5'- ---aGGcCGuCGGCGUGcugGCCGUGCg -3'
miRNA:   3'- cgcaCCaGUuGCCGUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 177525 0.69 0.939354
Target:  5'- -gGUGGUUGAUGGCGUGGaucagcaGCUGcUGCa -3'
miRNA:   3'- cgCACCAGUUGCCGUACUa------CGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 108451 0.69 0.934596
Target:  5'- cGCG-GGUguGCGGCGUGccGCUGauacccUGCa -3'
miRNA:   3'- -CGCaCCAguUGCCGUACuaCGGC------ACG- -5'
14035 3' -53.6 NC_003521.1 + 131315 0.7 0.929608
Target:  5'- ----cGUCGGCGGCGUcaccugGCCGUGCa -3'
miRNA:   3'- cgcacCAGUUGCCGUAcua---CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 205774 0.7 0.92439
Target:  5'- uGUGUGGUgGcgccgcACGGCAUGAg--CGUGCc -3'
miRNA:   3'- -CGCACCAgU------UGCCGUACUacgGCACG- -5'
14035 3' -53.6 NC_003521.1 + 98218 0.7 0.918941
Target:  5'- gGCG-GG-CAGCGGCGUGGgagGCgGggagGCg -3'
miRNA:   3'- -CGCaCCaGUUGCCGUACUa--CGgCa---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.