miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 107749 0.67 0.979554
Target:  5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3'
miRNA:   3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 123970 0.67 0.979554
Target:  5'- cGCGcaGGUCGucGCGGUcgGcgGCCGUc- -3'
miRNA:   3'- -CGCa-CCAGU--UGCCGuaCuaCGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 68386 0.67 0.977294
Target:  5'- aGCGaGGUgGACGcCGUGAgaUGCCGgcuggGCa -3'
miRNA:   3'- -CGCaCCAgUUGCcGUACU--ACGGCa----CG- -5'
14035 3' -53.6 NC_003521.1 + 20381 0.67 0.977294
Target:  5'- cGUGUGG-CuGCGG-GUGuacGCCGUGCu -3'
miRNA:   3'- -CGCACCaGuUGCCgUACua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 85471 0.67 0.977294
Target:  5'- -gGUGGUCGu---CGUGGUGCCgGUGCc -3'
miRNA:   3'- cgCACCAGUugccGUACUACGG-CACG- -5'
14035 3' -53.6 NC_003521.1 + 72728 0.67 0.974856
Target:  5'- cGCGUGuUgGAgGGCAuccgaccggUGGUGCCGcGCu -3'
miRNA:   3'- -CGCACcAgUUgCCGU---------ACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 178640 0.67 0.974856
Target:  5'- uGCGUcGUUGGCGGUc-GAUGCCGUcuugGCg -3'
miRNA:   3'- -CGCAcCAGUUGCCGuaCUACGGCA----CG- -5'
14035 3' -53.6 NC_003521.1 + 106288 0.68 0.972232
Target:  5'- cCGUGGagggCAACaGCAaccaggcgGcgGCCGUGCg -3'
miRNA:   3'- cGCACCa---GUUGcCGUa-------CuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 214171 0.68 0.969417
Target:  5'- gGCuUGGUCGACgGGCAguucGGUGgcaaCGUGCc -3'
miRNA:   3'- -CGcACCAGUUG-CCGUa---CUACg---GCACG- -5'
14035 3' -53.6 NC_003521.1 + 224434 0.68 0.968534
Target:  5'- uGCGUGGUgGGCGaGCGguccaggugcgucuUGAcgaUGaCCGUGUa -3'
miRNA:   3'- -CGCACCAgUUGC-CGU--------------ACU---AC-GGCACG- -5'
14035 3' -53.6 NC_003521.1 + 205348 0.68 0.966403
Target:  5'- ---cGG-CGGCGGCAgcugcGCCGUGCa -3'
miRNA:   3'- cgcaCCaGUUGCCGUacua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 17145 0.68 0.963186
Target:  5'- -aGUGGUuccagCAGCGGCGcGAgGCCGagGCg -3'
miRNA:   3'- cgCACCA-----GUUGCCGUaCUaCGGCa-CG- -5'
14035 3' -53.6 NC_003521.1 + 88068 0.68 0.963186
Target:  5'- cGCgGUGGUCGGCGGCGc----CCGUGa -3'
miRNA:   3'- -CG-CACCAGUUGCCGUacuacGGCACg -5'
14035 3' -53.6 NC_003521.1 + 20648 0.68 0.963186
Target:  5'- cGCGcUGGUgGGCGccuaCGUGAUGaCCGUGg -3'
miRNA:   3'- -CGC-ACCAgUUGCc---GUACUAC-GGCACg -5'
14035 3' -53.6 NC_003521.1 + 154538 0.68 0.95976
Target:  5'- uGCGUGaUCAcCGGCAccacggUGAUcGCCGcGCa -3'
miRNA:   3'- -CGCACcAGUuGCCGU------ACUA-CGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 144194 0.68 0.95976
Target:  5'- cGCGcUGGagAACGGCAaGcUGCagcaGUGCg -3'
miRNA:   3'- -CGC-ACCagUUGCCGUaCuACGg---CACG- -5'
14035 3' -53.6 NC_003521.1 + 130128 0.68 0.95976
Target:  5'- uGCGUcGUCGGCGGCGcc--GCCGcUGCc -3'
miRNA:   3'- -CGCAcCAGUUGCCGUacuaCGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 113834 0.69 0.956121
Target:  5'- aCGUcGGgCAGCGGCAgcgggGcgGCCG-GCg -3'
miRNA:   3'- cGCA-CCaGUUGCCGUa----CuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 16704 0.69 0.956121
Target:  5'- aUGUGGcaGACGcGCGUGAUGCgCG-GCg -3'
miRNA:   3'- cGCACCagUUGC-CGUACUACG-GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 184127 0.69 0.956121
Target:  5'- uGCGcGGccgaGACGGCGUGuUGaUCGUGCa -3'
miRNA:   3'- -CGCaCCag--UUGCCGUACuAC-GGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.