miRNA display CGI


Results 81 - 100 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 87627 0.66 0.887382
Target:  5'- gUCGgaCAGCAaauCGCGCAUCGGCaucgaggacaGCg -3'
miRNA:   3'- -GGCg-GUCGUaguGCGCGUAGCCGg---------CG- -5'
14035 5' -59.1 NC_003521.1 + 120982 0.66 0.887382
Target:  5'- uCCGCCAGCucGUCcuCGuCGgaGUCGgaGCCGCu -3'
miRNA:   3'- -GGCGGUCG--UAGu-GC-GCg-UAGC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 207950 0.66 0.886735
Target:  5'- aCCGgCGGCG-CGgGCGCcaaaccgAUCGGCCu- -3'
miRNA:   3'- -GGCgGUCGUaGUgCGCG-------UAGCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 127851 0.66 0.886735
Target:  5'- cCCGCCgcugAGCggCAUguaguaGCGCAUCucgggcgGGUCGCg -3'
miRNA:   3'- -GGCGG----UCGuaGUG------CGCGUAG-------CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 134943 0.66 0.886735
Target:  5'- gCCcCCGGCAUC-UGCGCccugaucGUgGGCaCGCg -3'
miRNA:   3'- -GGcGGUCGUAGuGCGCG-------UAgCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 76365 0.66 0.886735
Target:  5'- gCGgCAGCggcgaccGUgACG-GCcgCGGCCGCg -3'
miRNA:   3'- gGCgGUCG-------UAgUGCgCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 27033 0.66 0.884784
Target:  5'- gCCGUuuCGGCGUCcacaugcgcgucuACGCGCuggccaucuucuacgUGGCCGCc -3'
miRNA:   3'- -GGCG--GUCGUAG-------------UGCGCGua-------------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 133379 0.66 0.883473
Target:  5'- aUGCCAGCGUCACGCuacccaccaagucuuGCGacgucaacgaGGgCGCg -3'
miRNA:   3'- gGCGGUCGUAGUGCG---------------CGUag--------CCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 203673 0.66 0.881492
Target:  5'- uCCGUCAGCAgguagaagcagaagcCGCGCGgCAUguugCGcGCCGUg -3'
miRNA:   3'- -GGCGGUCGUa--------------GUGCGC-GUA----GC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 103796 0.66 0.880828
Target:  5'- gCCGCCGGUuauugaccgCcCGgGCcUCGGCCaGCu -3'
miRNA:   3'- -GGCGGUCGua-------GuGCgCGuAGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 90547 0.66 0.880828
Target:  5'- cCCGCgaCAGCAccCACGagagGC--CGGCCGCg -3'
miRNA:   3'- -GGCG--GUCGUa-GUGCg---CGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 165868 0.66 0.880828
Target:  5'- gCuCCAGCGgugCACGUGC-UCgGGCgGCg -3'
miRNA:   3'- gGcGGUCGUa--GUGCGCGuAG-CCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 135241 0.66 0.880828
Target:  5'- gCGCCGGCGgcgGCGaCGaCA-CGGCgGCg -3'
miRNA:   3'- gGCGGUCGUag-UGC-GC-GUaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 111499 0.66 0.880828
Target:  5'- cCUGaCCAGCGggCugGCGg--CGGCgGCg -3'
miRNA:   3'- -GGC-GGUCGUa-GugCGCguaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 196311 0.66 0.880828
Target:  5'- aUGCUGGCcaugCA-GCGCAUgGGCCGg -3'
miRNA:   3'- gGCGGUCGua--GUgCGCGUAgCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 129961 0.66 0.880828
Target:  5'- gCCGCgGGCcgCugcucuACGUGCAccgUCGcuGCCGCu -3'
miRNA:   3'- -GGCGgUCGuaG------UGCGCGU---AGC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 96783 0.66 0.880828
Target:  5'- gCCGCCGGCAgcaGCggcgGCGC-UCGGgcacgaUCGCg -3'
miRNA:   3'- -GGCGGUCGUag-UG----CGCGuAGCC------GGCG- -5'
14035 5' -59.1 NC_003521.1 + 161255 0.66 0.880828
Target:  5'- gCgGCCAGgAUCAgaGCaGCGaCGGCgGCa -3'
miRNA:   3'- -GgCGGUCgUAGUg-CG-CGUaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 181461 0.66 0.880828
Target:  5'- gCGuCCAGCggCugGCGCGcCGcCUGCa -3'
miRNA:   3'- gGC-GGUCGuaGugCGCGUaGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 105433 0.66 0.880828
Target:  5'- cCCGCCucGGCAcggUUugGCGCccgCGggcgauaaccGCCGCg -3'
miRNA:   3'- -GGCGG--UCGU---AGugCGCGua-GC----------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.