miRNA display CGI


Results 61 - 80 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 37664 0.66 0.891851
Target:  5'- uCUGCCGGCAcgACGgGCAugggacgaucgaucUCGGCUccgGCu -3'
miRNA:   3'- -GGCGGUCGUagUGCgCGU--------------AGCCGG---CG- -5'
14035 5' -59.1 NC_003521.1 + 86112 0.66 0.891218
Target:  5'- gCCGCUGGaugguguucuccUCGCGCGCGUCGcacaCGCg -3'
miRNA:   3'- -GGCGGUCgu----------AGUGCGCGUAGCcg--GCG- -5'
14035 5' -59.1 NC_003521.1 + 113055 0.66 0.889948
Target:  5'- gCGCCGuGCuccagCACcuuccgggcuacgagGCGCAgaCGGCCGCc -3'
miRNA:   3'- gGCGGU-CGua---GUG---------------CGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 188269 0.66 0.889948
Target:  5'- uCUGCCGGCGUC-UGCGgAagaagaggggccucuUUGGCgGCu -3'
miRNA:   3'- -GGCGGUCGUAGuGCGCgU---------------AGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 75044 0.66 0.887382
Target:  5'- gCGCCAGCGggCugGC-CuUCGGCaCGa -3'
miRNA:   3'- gGCGGUCGUa-GugCGcGuAGCCG-GCg -5'
14035 5' -59.1 NC_003521.1 + 152308 0.66 0.887382
Target:  5'- gCGCCuGCAcggcugcgagUCGCuGCGCGU--GCCGCu -3'
miRNA:   3'- gGCGGuCGU----------AGUG-CGCGUAgcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 12557 0.66 0.887382
Target:  5'- aCGCCgAGCGUCugGagaugcccggGCGUUGuCCGCa -3'
miRNA:   3'- gGCGG-UCGUAGugCg---------CGUAGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 114802 0.66 0.887382
Target:  5'- uUCGgCAGCAugUCGgaGCGCAacgCGGCgGCc -3'
miRNA:   3'- -GGCgGUCGU--AGUg-CGCGUa--GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 223147 0.66 0.887382
Target:  5'- uCCGCgAGaacCACGCccGCAgucuggaGGCCGCa -3'
miRNA:   3'- -GGCGgUCguaGUGCG--CGUag-----CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 221815 0.66 0.887382
Target:  5'- uCCGUCGGCGgggCGgGCGUGUCucccucGUCGCg -3'
miRNA:   3'- -GGCGGUCGUa--GUgCGCGUAGc-----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 100184 0.66 0.887382
Target:  5'- gCGCCAgGCG-CAgGCuC-UCGGCCGUg -3'
miRNA:   3'- gGCGGU-CGUaGUgCGcGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 76218 0.66 0.887382
Target:  5'- cCCGCCGGCAcgCccuggGCGCGCAcguccUCGaGCgugaggCGCg -3'
miRNA:   3'- -GGCGGUCGUa-G-----UGCGCGU-----AGC-CG------GCG- -5'
14035 5' -59.1 NC_003521.1 + 120982 0.66 0.887382
Target:  5'- uCCGCCAGCucGUCcuCGuCGgaGUCGgaGCCGCu -3'
miRNA:   3'- -GGCGGUCG--UAGu-GC-GCg-UAGC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 180393 0.66 0.887382
Target:  5'- gCGCCGGaguacugCugGUgguGCuggCGGCCGCg -3'
miRNA:   3'- gGCGGUCgua----GugCG---CGua-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 136229 0.66 0.887382
Target:  5'- gUCuaCAGCuaccUCAUGaCGCAcgcCGGCCGCu -3'
miRNA:   3'- -GGcgGUCGu---AGUGC-GCGUa--GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 22949 0.66 0.887382
Target:  5'- aCCGCUAGauggcUCGgGUGCAcgUCGuGCUGCu -3'
miRNA:   3'- -GGCGGUCgu---AGUgCGCGU--AGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 44343 0.66 0.887382
Target:  5'- gCUGCaccGCAUCcgcgACGCGCuggGGCUGCg -3'
miRNA:   3'- -GGCGgu-CGUAG----UGCGCGuagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 91653 0.66 0.887382
Target:  5'- -aGCCGGCGUgcccgcggcuccCugGCGCAUU--CCGCa -3'
miRNA:   3'- ggCGGUCGUA------------GugCGCGUAGccGGCG- -5'
14035 5' -59.1 NC_003521.1 + 227974 0.66 0.887382
Target:  5'- aCCGCU-GCGUCugcuCGCGCAcgugaucgUUGaGCUGCu -3'
miRNA:   3'- -GGCGGuCGUAGu---GCGCGU--------AGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 137822 0.66 0.887382
Target:  5'- gCUGCauuauuaaGGCGcUCACGcCGCGgcUgGGCCGCc -3'
miRNA:   3'- -GGCGg-------UCGU-AGUGC-GCGU--AgCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.