miRNA display CGI


Results 41 - 60 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 233165 0.66 0.893736
Target:  5'- aCCGCUguccGCGcCGC-CGUggCGGCCGCc -3'
miRNA:   3'- -GGCGGu---CGUaGUGcGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 116516 0.66 0.893736
Target:  5'- uCUGCCuggguuGCGUCAccucgcCGCGCuuucuggagaucGUCaGCCGCg -3'
miRNA:   3'- -GGCGGu-----CGUAGU------GCGCG------------UAGcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 131345 0.66 0.893736
Target:  5'- uUCGCCccguGcCGUCGCaaGCuCAUCGGCgGCa -3'
miRNA:   3'- -GGCGGu---C-GUAGUG--CGcGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 232424 0.66 0.893736
Target:  5'- aCGCCAGCG-CcUGCGUGUCGGagGUc -3'
miRNA:   3'- gGCGGUCGUaGuGCGCGUAGCCggCG- -5'
14035 5' -59.1 NC_003521.1 + 30957 0.66 0.893736
Target:  5'- gUGCCAaGC--CAgGCGC-UCGGCaCGCa -3'
miRNA:   3'- gGCGGU-CGuaGUgCGCGuAGCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 209383 0.66 0.893736
Target:  5'- aCGCCGuGCuggCGCuGCGCAUCauCCGCc -3'
miRNA:   3'- gGCGGU-CGua-GUG-CGCGUAGccGGCG- -5'
14035 5' -59.1 NC_003521.1 + 214345 0.66 0.893736
Target:  5'- gCGCCAGaga-GCGCGCAggCGG-UGCu -3'
miRNA:   3'- gGCGGUCguagUGCGCGUa-GCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 36802 0.66 0.893736
Target:  5'- gCGCCuuucgGGCAggccgugaUCACGCGCcacgGGCCGg -3'
miRNA:   3'- gGCGG-----UCGU--------AGUGCGCGuag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 214806 0.66 0.893736
Target:  5'- aCCGCCgucgGGCGcCGgGCGCGgcgaCGGCgGUu -3'
miRNA:   3'- -GGCGG----UCGUaGUgCGCGUa---GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 223776 0.66 0.893736
Target:  5'- gCUGUCGGCgccGUUAcCGC-CGUgGGCCGCc -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGcGUAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 225772 0.66 0.893736
Target:  5'- gCGCC-GCu---CGCGC-UCGcGCCGCu -3'
miRNA:   3'- gGCGGuCGuaguGCGCGuAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 95772 0.66 0.893736
Target:  5'- gCCGcCCAGacgGUCAuCGUGCcgcUCGGCCacGCg -3'
miRNA:   3'- -GGC-GGUCg--UAGU-GCGCGu--AGCCGG--CG- -5'
14035 5' -59.1 NC_003521.1 + 149725 0.66 0.893736
Target:  5'- cCCGaCCGGCG-CAgGCGCAgacgGGCCc- -3'
miRNA:   3'- -GGC-GGUCGUaGUgCGCGUag--CCGGcg -5'
14035 5' -59.1 NC_003521.1 + 20298 0.66 0.893736
Target:  5'- cUCGCCGGCGcCAUGCaGCAccaggaGGCCa- -3'
miRNA:   3'- -GGCGGUCGUaGUGCG-CGUag----CCGGcg -5'
14035 5' -59.1 NC_003521.1 + 213119 0.66 0.893736
Target:  5'- gCGCUgGGUGUgGCGUGgugCGGCCGCa -3'
miRNA:   3'- gGCGG-UCGUAgUGCGCguaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 195097 0.66 0.893736
Target:  5'- uCgGCCAGUccGUCGCGgGgguccucguCAUCGucGCCGCg -3'
miRNA:   3'- -GgCGGUCG--UAGUGCgC---------GUAGC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 17423 0.66 0.893736
Target:  5'- gCGCCggGGCGccaCACGgccCGCGUCGgggcGCCGCg -3'
miRNA:   3'- gGCGG--UCGUa--GUGC---GCGUAGC----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 73767 0.66 0.893736
Target:  5'- gCCGgcaCCGGCGUCAUgaGCGCcac-GCCGCu -3'
miRNA:   3'- -GGC---GGUCGUAGUG--CGCGuagcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 112396 0.66 0.893736
Target:  5'- -gGCUGGCG-CAgUGCGCcgacCGGCCGCc -3'
miRNA:   3'- ggCGGUCGUaGU-GCGCGua--GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 137685 0.66 0.893736
Target:  5'- uCCGCCuggugcuGCAgCAC-CGCcgCGcGCUGCg -3'
miRNA:   3'- -GGCGGu------CGUaGUGcGCGuaGC-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.