miRNA display CGI


Results 41 - 60 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 223776 0.66 0.893736
Target:  5'- gCUGUCGGCgccGUUAcCGC-CGUgGGCCGCc -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGcGUAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 35002 0.66 0.874077
Target:  5'- -gGCCAGCGagCGCuuGCGUCGuGCCcgGCg -3'
miRNA:   3'- ggCGGUCGUa-GUGcgCGUAGC-CGG--CG- -5'
14035 5' -59.1 NC_003521.1 + 225772 0.66 0.893736
Target:  5'- gCGCC-GCu---CGCGC-UCGcGCCGCu -3'
miRNA:   3'- gGCGGuCGuaguGCGCGuAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 229521 0.66 0.874077
Target:  5'- aCGauggucaCAGCAgaaGCGguCGCAcCGGCCGCa -3'
miRNA:   3'- gGCg------GUCGUag-UGC--GCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 30957 0.66 0.893736
Target:  5'- gUGCCAaGC--CAgGCGC-UCGGCaCGCa -3'
miRNA:   3'- gGCGGU-CGuaGUgCGCGuAGCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 180393 0.66 0.887382
Target:  5'- gCGCCGGaguacugCugGUgguGCuggCGGCCGCg -3'
miRNA:   3'- gGCGGUCgua----GugCG---CGua-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 83918 0.66 0.880162
Target:  5'- cCCGCUccGGCccGUCGCcccccgugccaucGgGCAgCGGCCGCc -3'
miRNA:   3'- -GGCGG--UCG--UAGUG-------------CgCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 100184 0.66 0.887382
Target:  5'- gCGCCAgGCG-CAgGCuC-UCGGCCGUg -3'
miRNA:   3'- gGCGGU-CGUaGUgCGcGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 232424 0.66 0.893736
Target:  5'- aCGCCAGCG-CcUGCGUGUCGGagGUc -3'
miRNA:   3'- gGCGGUCGUaGuGCGCGUAGCCggCG- -5'
14035 5' -59.1 NC_003521.1 + 204031 0.66 0.874077
Target:  5'- uCCGCgAGCGgcucCGCaGCGCGUgGcccugccagucGCCGCa -3'
miRNA:   3'- -GGCGgUCGUa---GUG-CGCGUAgC-----------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 214806 0.66 0.893736
Target:  5'- aCCGCCgucgGGCGcCGgGCGCGgcgaCGGCgGUu -3'
miRNA:   3'- -GGCGG----UCGUaGUgCGCGUa---GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 25528 0.66 0.880162
Target:  5'- aCCGCCucucuucagggagAGCGacggcggacgcUguUGUGCAggCGGCCGCg -3'
miRNA:   3'- -GGCGG-------------UCGU-----------AguGCGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 222645 0.66 0.89928
Target:  5'- -gGCCGGCAg-GCGCGCAgCGccuccacGCUGCc -3'
miRNA:   3'- ggCGGUCGUagUGCGCGUaGC-------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 76317 0.66 0.89928
Target:  5'- aCGUCGcGCGUCACGCccuugacgaacucGCA--GGCCGUc -3'
miRNA:   3'- gGCGGU-CGUAGUGCG-------------CGUagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 130481 0.66 0.899886
Target:  5'- -gGcCCAGCuacacCGCGaGCG-CGGCCGCg -3'
miRNA:   3'- ggC-GGUCGua---GUGCgCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 53398 0.66 0.899886
Target:  5'- uCUG-CAGCuccUUGCGgGCGUCGGgCGCc -3'
miRNA:   3'- -GGCgGUCGu--AGUGCgCGUAGCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 165868 0.66 0.880828
Target:  5'- gCuCCAGCGgugCACGUGC-UCgGGCgGCg -3'
miRNA:   3'- gGcGGUCGUa--GUGCGCGuAG-CCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 169416 0.66 0.893736
Target:  5'- aCGCCAGCA-CGC-CGUA--GGCCaGCa -3'
miRNA:   3'- gGCGGUCGUaGUGcGCGUagCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 130966 0.66 0.887382
Target:  5'- gCCGCCGccCGUCACGuCGuUGUCGGgCCGg -3'
miRNA:   3'- -GGCGGUc-GUAGUGC-GC-GUAGCC-GGCg -5'
14035 5' -59.1 NC_003521.1 + 120982 0.66 0.887382
Target:  5'- uCCGCCAGCucGUCcuCGuCGgaGUCGgaGCCGCu -3'
miRNA:   3'- -GGCGGUCG--UAGu-GC-GCg-UAGC--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.