miRNA display CGI


Results 41 - 60 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 113224 0.74 0.453123
Target:  5'- gCGCUcgGGCcUCACGUGCAUCacggGGCUGCu -3'
miRNA:   3'- gGCGG--UCGuAGUGCGCGUAG----CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 113020 0.74 0.46183
Target:  5'- gCGCCuGGCAgaucauggagCACGUGCGgcuaCGGCCGCc -3'
miRNA:   3'- gGCGG-UCGUa---------GUGCGCGUa---GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 153634 0.74 0.46183
Target:  5'- gCGCCAGCGggugCgucucgguggaGCGCuGCA-CGGCCGCg -3'
miRNA:   3'- gGCGGUCGUa---G-----------UGCG-CGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 112793 0.74 0.46183
Target:  5'- gCCGCCuacgggCACGCGCucugggaCGGCCGCg -3'
miRNA:   3'- -GGCGGucgua-GUGCGCGua-----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 124433 0.74 0.46183
Target:  5'- cUCGuCCGGCGagACGUGguUgGGCCGCg -3'
miRNA:   3'- -GGC-GGUCGUagUGCGCguAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 86294 0.74 0.46183
Target:  5'- gUGCCGGUgAUCACGCaGUugagGUUGGCCGCc -3'
miRNA:   3'- gGCGGUCG-UAGUGCG-CG----UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 89516 0.74 0.470624
Target:  5'- cCCGCCuGGCcgCcuuGCGCGCGUCggaacccaGGCUGCg -3'
miRNA:   3'- -GGCGG-UCGuaG---UGCGCGUAG--------CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 168525 0.74 0.470624
Target:  5'- aCGCCAGCAggCugGCGgcCAgcgCGGCgGCg -3'
miRNA:   3'- gGCGGUCGUa-GugCGC--GUa--GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 44369 0.74 0.470624
Target:  5'- gUGCCAGCGgagguUCGCGCgGCAgcCGGCCGa -3'
miRNA:   3'- gGCGGUCGU-----AGUGCG-CGUa-GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 106850 0.74 0.470624
Target:  5'- gCgGCCAGCGUC-CGCGCAU-GGaCGCc -3'
miRNA:   3'- -GgCGGUCGUAGuGCGCGUAgCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 162868 0.74 0.470624
Target:  5'- -gGCCAacgcGCAggggCGCGCGCAggUgGGCCGCu -3'
miRNA:   3'- ggCGGU----CGUa---GUGCGCGU--AgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 204439 0.74 0.479503
Target:  5'- gCCGCCAGCAgCACGgaaaGCAgcacgCGaaGCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUGCg---CGUa----GC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 125034 0.74 0.479503
Target:  5'- uCCGCgGGUAUC-CGCGCGUgUGGuCCGUg -3'
miRNA:   3'- -GGCGgUCGUAGuGCGCGUA-GCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 133964 0.74 0.479503
Target:  5'- aCCGUacgGGCGUcCAUGCGCGgacgcUGGCCGCg -3'
miRNA:   3'- -GGCGg--UCGUA-GUGCGCGUa----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 166714 0.74 0.488463
Target:  5'- gCGCCcaugGGCGUCGCGCagucgcgcaGCAugUCGGCCaGCa -3'
miRNA:   3'- gGCGG----UCGUAGUGCG---------CGU--AGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 154400 0.74 0.488463
Target:  5'- gCCGCCaaucaggaGGCGggCACGCGCGUCccCCGCg -3'
miRNA:   3'- -GGCGG--------UCGUa-GUGCGCGUAGccGGCG- -5'
14035 5' -59.1 NC_003521.1 + 137566 0.74 0.488463
Target:  5'- gCCGagCAGCAgugCACGCGCGaaccguuauucuUgGGCCGCc -3'
miRNA:   3'- -GGCg-GUCGUa--GUGCGCGU------------AgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 154640 0.74 0.488463
Target:  5'- uUCGUCAGCAagCACGUGCcgCuGGCCGa -3'
miRNA:   3'- -GGCGGUCGUa-GUGCGCGuaG-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 148818 0.74 0.492068
Target:  5'- gCCGCCGcgccucgccgcucccGCuccguUCGCGcCGgAUCGGCCGCc -3'
miRNA:   3'- -GGCGGU---------------CGu----AGUGC-GCgUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 56694 0.73 0.494781
Target:  5'- gCCGCCcaGGCAgcggaugacgcuggUCGCGuCGaCGUCGaGCCGCg -3'
miRNA:   3'- -GGCGG--UCGU--------------AGUGC-GC-GUAGC-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.