miRNA display CGI


Results 41 - 60 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 29345 0.66 0.893736
Target:  5'- gCUGCCAcGCG-CACuggacggaGUGCGaacccgCGGCCGCg -3'
miRNA:   3'- -GGCGGU-CGUaGUG--------CGCGUa-----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 30228 0.75 0.427553
Target:  5'- gCCGUUGGCGUCGCGCuGCAgguccgcgCGGuuGCc -3'
miRNA:   3'- -GGCGGUCGUAGUGCG-CGUa-------GCCggCG- -5'
14035 5' -59.1 NC_003521.1 + 30957 0.66 0.893736
Target:  5'- gUGCCAaGC--CAgGCGC-UCGGCaCGCa -3'
miRNA:   3'- gGCGGU-CGuaGUgCGCGuAGCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 31130 0.67 0.829699
Target:  5'- gCGCCuguucguggagcAGCGUUACGUGCucUUGGCCu- -3'
miRNA:   3'- gGCGG------------UCGUAGUGCGCGu-AGCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 31267 0.67 0.865014
Target:  5'- gCCGCCAcCGUCGCcgccaccccgccggGCGCAUaaccgCGGCaGCg -3'
miRNA:   3'- -GGCGGUcGUAGUG--------------CGCGUA-----GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 31779 0.66 0.874077
Target:  5'- gCGCCAGUcgccgCACuCGCAgaaGGCCGa -3'
miRNA:   3'- gGCGGUCGua---GUGcGCGUag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 32091 0.72 0.562616
Target:  5'- aCgGCCAGCGcCAUGCGU-UUGGCgGCg -3'
miRNA:   3'- -GgCGGUCGUaGUGCGCGuAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 33239 0.75 0.410988
Target:  5'- -aGCCGGCGUugagcuggcaCACGCGCAgcaGGCCGg -3'
miRNA:   3'- ggCGGUCGUA----------GUGCGCGUag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 33445 0.67 0.845194
Target:  5'- gCUGCUggGGC-UCGCGCuguucucgGUGUCGGCCGg -3'
miRNA:   3'- -GGCGG--UCGuAGUGCG--------CGUAGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 34481 0.7 0.688466
Target:  5'- -gGCCAGCAgcucgCGgaagcagagcagcgaGCGCAgguagCGGCCGCg -3'
miRNA:   3'- ggCGGUCGUa----GUg--------------CGCGUa----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 34697 0.72 0.572129
Target:  5'- cCCGUucuCAGCAUCGCGCaGCAgcugacCGGCCu- -3'
miRNA:   3'- -GGCG---GUCGUAGUGCG-CGUa-----GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 35002 0.66 0.874077
Target:  5'- -gGCCAGCGagCGCuuGCGUCGuGCCcgGCg -3'
miRNA:   3'- ggCGGUCGUa-GUGcgCGUAGC-CGG--CG- -5'
14035 5' -59.1 NC_003521.1 + 36249 0.68 0.782211
Target:  5'- aCUGCCGGCGcgcgacgugguggauUCGuggaucgaggcgcUGCGCAccUCGGaCCGCg -3'
miRNA:   3'- -GGCGGUCGU---------------AGU-------------GCGCGU--AGCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 36665 0.67 0.83753
Target:  5'- aCUGCCAGa---ACGUGCAcaUCGGCUuucuGCa -3'
miRNA:   3'- -GGCGGUCguagUGCGCGU--AGCCGG----CG- -5'
14035 5' -59.1 NC_003521.1 + 36802 0.66 0.893736
Target:  5'- gCGCCuuucgGGCAggccgugaUCACGCGCcacgGGCCGg -3'
miRNA:   3'- gGCGG-----UCGU--------AGUGCGCGuag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 36956 0.66 0.893736
Target:  5'- aCGCUGGuCGUCGCagcggagcggGUGC-UCGGCgGCg -3'
miRNA:   3'- gGCGGUC-GUAGUG----------CGCGuAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 37457 0.67 0.860002
Target:  5'- gCUGUgGGC-UCGCGCGCGggccaccgUgGuGCCGCa -3'
miRNA:   3'- -GGCGgUCGuAGUGCGCGU--------AgC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 37664 0.66 0.891851
Target:  5'- uCUGCCGGCAcgACGgGCAugggacgaucgaucUCGGCUccgGCu -3'
miRNA:   3'- -GGCGGUCGUagUGCgCGU--------------AGCCGG---CG- -5'
14035 5' -59.1 NC_003521.1 + 38290 0.68 0.821708
Target:  5'- gCGCgCAGCAggugCGagaGCuCGUCGGCCaGCg -3'
miRNA:   3'- gGCG-GUCGUa---GUg--CGcGUAGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 38353 0.66 0.880162
Target:  5'- uUCGCCGGCGUCaagaaggACGCugGCAUgGuagguGCCGUa -3'
miRNA:   3'- -GGCGGUCGUAG-------UGCG--CGUAgC-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.