miRNA display CGI


Results 21 - 40 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 16990 0.66 0.893736
Target:  5'- gCCGCagggaCAGCAggCGCcCGCGguggCGGCgGCg -3'
miRNA:   3'- -GGCG-----GUCGUa-GUGcGCGUa---GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 17179 0.67 0.829699
Target:  5'- gCGCUGGCAgcugggCAgGCGCAUCGuGgaCGCc -3'
miRNA:   3'- gGCGGUCGUa-----GUgCGCGUAGC-Cg-GCG- -5'
14035 5' -59.1 NC_003521.1 + 17423 0.66 0.893736
Target:  5'- gCGCCggGGCGccaCACGgccCGCGUCGgggcGCCGCg -3'
miRNA:   3'- gGCGG--UCGUa--GUGC---GCGUAGC----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 17607 0.7 0.7065
Target:  5'- gCGCCAGgCGUCGCgGCGUAUaCGaacCCGCu -3'
miRNA:   3'- gGCGGUC-GUAGUG-CGCGUA-GCc--GGCG- -5'
14035 5' -59.1 NC_003521.1 + 18132 0.66 0.874077
Target:  5'- aCGcCCGGCcgCAC-CGagGUCGaGCCGCu -3'
miRNA:   3'- gGC-GGUCGuaGUGcGCg-UAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 18193 0.69 0.734542
Target:  5'- cCUGCCGGCccuucgAUCACa--UGUCGGCCGCg -3'
miRNA:   3'- -GGCGGUCG------UAGUGcgcGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 20298 0.66 0.893736
Target:  5'- cUCGCCGGCGcCAUGCaGCAccaggaGGCCa- -3'
miRNA:   3'- -GGCGGUCGUaGUGCG-CGUag----CCGGcg -5'
14035 5' -59.1 NC_003521.1 + 20731 0.67 0.83753
Target:  5'- aCCGCUGGCG----GUGCAUCaGCUGCg -3'
miRNA:   3'- -GGCGGUCGUagugCGCGUAGcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 22188 0.76 0.384546
Target:  5'- gCCGCCGGCcgUggccgcuuaccgccGCGCGCuggCGGCCGa -3'
miRNA:   3'- -GGCGGUCGuaG--------------UGCGCGua-GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 22401 0.66 0.893736
Target:  5'- gCCGCC-GCuGUCGCuggccaugcuGCGCGgcgUGGCCGa -3'
miRNA:   3'- -GGCGGuCG-UAGUG----------CGCGUa--GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 22949 0.66 0.887382
Target:  5'- aCCGCUAGauggcUCGgGUGCAcgUCGuGCUGCu -3'
miRNA:   3'- -GGCGGUCgu---AGUgCGCGU--AGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 24300 0.67 0.859279
Target:  5'- -gGCUcgAGCGauucgagguccucUCACGCGuCGUCGGCCu- -3'
miRNA:   3'- ggCGG--UCGU-------------AGUGCGC-GUAGCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 24826 0.7 0.668361
Target:  5'- gCCGUCAGUcUCuGCGUgGCGcUGGCCGCa -3'
miRNA:   3'- -GGCGGUCGuAG-UGCG-CGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 25528 0.66 0.880162
Target:  5'- aCCGCCucucuucagggagAGCGacggcggacgcUguUGUGCAggCGGCCGCg -3'
miRNA:   3'- -GGCGG-------------UCGU-----------AguGCGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 27033 0.66 0.884784
Target:  5'- gCCGUuuCGGCGUCcacaugcgcgucuACGCGCuggccaucuucuacgUGGCCGCc -3'
miRNA:   3'- -GGCG--GUCGUAG-------------UGCGCGua-------------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 27242 0.68 0.813564
Target:  5'- aUCGCCGGCugcuacGUgGCGCuGCuGUCGGUCaGCa -3'
miRNA:   3'- -GGCGGUCG------UAgUGCG-CG-UAGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 27697 0.73 0.524116
Target:  5'- uUCGCUgcGGCcgCACcacgccacacccaGCGCGUCGaGCCGCg -3'
miRNA:   3'- -GGCGG--UCGuaGUG-------------CGCGUAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 28568 0.66 0.899886
Target:  5'- aCCGCCGGCcaccgacUACGCGgAcggCGgGCUGCu -3'
miRNA:   3'- -GGCGGUCGua-----GUGCGCgUa--GC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 28738 0.68 0.796843
Target:  5'- aCGCCGaCAaccagaCGCGCGCG--GGCCGCg -3'
miRNA:   3'- gGCGGUcGUa-----GUGCGCGUagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 28816 0.7 0.668361
Target:  5'- aCgGCCAGUAcCugGCGUGUCuGCgGCg -3'
miRNA:   3'- -GgCGGUCGUaGugCGCGUAGcCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.