miRNA display CGI


Results 21 - 40 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 113055 0.66 0.889948
Target:  5'- gCGCCGuGCuccagCACcuuccgggcuacgagGCGCAgaCGGCCGCc -3'
miRNA:   3'- gGCGGU-CGua---GUG---------------CGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 154931 0.66 0.880828
Target:  5'- aCGCCcuguGCGaCACGCGCcUCuaCCGCg -3'
miRNA:   3'- gGCGGu---CGUaGUGCGCGuAGccGGCG- -5'
14035 5' -59.1 NC_003521.1 + 137822 0.66 0.887382
Target:  5'- gCUGCauuauuaaGGCGcUCACGcCGCGgcUgGGCCGCc -3'
miRNA:   3'- -GGCGg-------UCGU-AGUGC-GCGU--AgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 44343 0.66 0.887382
Target:  5'- gCUGCaccGCAUCcgcgACGCGCuggGGCUGCg -3'
miRNA:   3'- -GGCGgu-CGUAG----UGCGCGuagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 46631 0.66 0.874077
Target:  5'- -aGCCAgGCGguagACG-GCGUCGGCgGCg -3'
miRNA:   3'- ggCGGU-CGUag--UGCgCGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 214247 0.66 0.874077
Target:  5'- aCCGUguagaggcacagCAGCAUCuuGUGCAUCaGCUGg -3'
miRNA:   3'- -GGCG------------GUCGUAGugCGCGUAGcCGGCg -5'
14035 5' -59.1 NC_003521.1 + 102425 0.66 0.880828
Target:  5'- uCCaCaCGGCgAUCcagACGCGCcgCaGGCCGCg -3'
miRNA:   3'- -GGcG-GUCG-UAG---UGCGCGuaG-CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 221815 0.66 0.887382
Target:  5'- uCCGUCGGCGgggCGgGCGUGUCucccucGUCGCg -3'
miRNA:   3'- -GGCGGUCGUa--GUgCGCGUAGc-----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 100692 0.66 0.880828
Target:  5'- aUGCUgauGCGgaggCGC-CGCcgCGGCCGCu -3'
miRNA:   3'- gGCGGu--CGUa---GUGcGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 156577 0.66 0.880828
Target:  5'- aCCGCCAucGCAUcCACcccgaggugGUGCAgcgCGGCCu- -3'
miRNA:   3'- -GGCGGU--CGUA-GUG---------CGCGUa--GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 130966 0.66 0.887382
Target:  5'- gCCGCCGccCGUCACGuCGuUGUCGGgCCGg -3'
miRNA:   3'- -GGCGGUc-GUAGUGC-GC-GUAGCC-GGCg -5'
14035 5' -59.1 NC_003521.1 + 100184 0.66 0.887382
Target:  5'- gCGCCAgGCG-CAgGCuC-UCGGCCGUg -3'
miRNA:   3'- gGCGGU-CGUaGUgCGcGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 76218 0.66 0.887382
Target:  5'- cCCGCCGGCAcgCccuggGCGCGCAcguccUCGaGCgugaggCGCg -3'
miRNA:   3'- -GGCGGUCGUa-G-----UGCGCGU-----AGC-CG------GCG- -5'
14035 5' -59.1 NC_003521.1 + 214345 0.66 0.893736
Target:  5'- gCGCCAGaga-GCGCGCAggCGG-UGCu -3'
miRNA:   3'- gGCGGUCguagUGCGCGUa-GCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 180393 0.66 0.887382
Target:  5'- gCGCCGGaguacugCugGUgguGCuggCGGCCGCg -3'
miRNA:   3'- gGCGGUCgua----GugCG---CGua-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 25528 0.66 0.880162
Target:  5'- aCCGCCucucuucagggagAGCGacggcggacgcUguUGUGCAggCGGCCGCg -3'
miRNA:   3'- -GGCGG-------------UCGU-----------AguGCGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 137631 0.66 0.880828
Target:  5'- aCCGCuCGcGCAUCgcggucgaguACGUGCucauUCGcGCCGUg -3'
miRNA:   3'- -GGCG-GU-CGUAG----------UGCGCGu---AGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 229521 0.66 0.874077
Target:  5'- aCGauggucaCAGCAgaaGCGguCGCAcCGGCCGCa -3'
miRNA:   3'- gGCg------GUCGUag-UGC--GCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 165868 0.66 0.880828
Target:  5'- gCuCCAGCGgugCACGUGC-UCgGGCgGCg -3'
miRNA:   3'- gGcGGUCGUa--GUGCGCGuAG-CCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 190409 0.66 0.880162
Target:  5'- aCCGCgAGuCcgCGgaGCGCGUCGacggcgaguaguaGCCGCa -3'
miRNA:   3'- -GGCGgUC-GuaGUg-CGCGUAGC-------------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.