Results 21 - 40 of 655 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 5' | -59.1 | NC_003521.1 | + | 225589 | 0.76 | 0.386903 |
Target: 5'- gCGCuCGGCGgccuCGCGC-UCGGCCGCc -3' miRNA: 3'- gGCG-GUCGUagu-GCGCGuAGCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 102802 | 0.76 | 0.386903 |
Target: 5'- gCGCCGGCAgcgacgCACGCGCAccUCGacGCCGa -3' miRNA: 3'- gGCGGUCGUa-----GUGCGCGU--AGC--CGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 212111 | 0.75 | 0.394828 |
Target: 5'- gCGCCAcCAUCugGCGCA-CGGUCGg -3' miRNA: 3'- gGCGGUcGUAGugCGCGUaGCCGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 70743 | 0.75 | 0.394828 |
Target: 5'- uUCGuCCAGCugcaGCGCGCcgCGGCCGa -3' miRNA: 3'- -GGC-GGUCGuag-UGCGCGuaGCCGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 216820 | 0.75 | 0.394828 |
Target: 5'- aCGCCGG-AUgGCGCGCAggaGGUCGCa -3' miRNA: 3'- gGCGGUCgUAgUGCGCGUag-CCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 206297 | 0.75 | 0.394828 |
Target: 5'- gUCGCC-GC-UCGCGCGUcUCGGcCCGCg -3' miRNA: 3'- -GGCGGuCGuAGUGCGCGuAGCC-GGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 182421 | 0.75 | 0.394828 |
Target: 5'- aCCGCC-GCAUCACGCGgCcgCGGCa-- -3' miRNA: 3'- -GGCGGuCGUAGUGCGC-GuaGCCGgcg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 173531 | 0.75 | 0.402857 |
Target: 5'- cUCGUCgGGCGUCAgGCGCAgCGGCUGUc -3' miRNA: 3'- -GGCGG-UCGUAGUgCGCGUaGCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 166221 | 0.75 | 0.402857 |
Target: 5'- gCGgCGGCGagGCGCGC--CGGCCGCg -3' miRNA: 3'- gGCgGUCGUagUGCGCGuaGCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 33239 | 0.75 | 0.410988 |
Target: 5'- -aGCCGGCGUugagcuggcaCACGCGCAgcaGGCCGg -3' miRNA: 3'- ggCGGUCGUA----------GUGCGCGUag-CCGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 192038 | 0.75 | 0.410988 |
Target: 5'- aCCGCCGGCGUgCGCG-GCAgacgCGGCgucCGCg -3' miRNA: 3'- -GGCGGUCGUA-GUGCgCGUa---GCCG---GCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 116853 | 0.75 | 0.419221 |
Target: 5'- gCCGCCGaccGCGacgaccugCGCGCGCAguggcgCGGCUGCg -3' miRNA: 3'- -GGCGGU---CGUa-------GUGCGCGUa-----GCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 153107 | 0.75 | 0.427553 |
Target: 5'- gCCGCCGGg--CGCGCGCGaCGGCaGCa -3' miRNA: 3'- -GGCGGUCguaGUGCGCGUaGCCGgCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 30228 | 0.75 | 0.427553 |
Target: 5'- gCCGUUGGCGUCGCGCuGCAgguccgcgCGGuuGCc -3' miRNA: 3'- -GGCGGUCGUAGUGCG-CGUa-------GCCggCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 186399 | 0.75 | 0.427553 |
Target: 5'- aCCGCgucagcuuccaCGGCGUCAagaacaUGCGCAUCGGCgUGCa -3' miRNA: 3'- -GGCG-----------GUCGUAGU------GCGCGUAGCCG-GCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 145714 | 0.75 | 0.435982 |
Target: 5'- -gGCCAcGCucaaGCGCGCG-CGGCCGCu -3' miRNA: 3'- ggCGGU-CGuag-UGCGCGUaGCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 169311 | 0.75 | 0.435982 |
Target: 5'- uCgGCCGGCGUCGgucgcaGCGUcgCGGCCGg -3' miRNA: 3'- -GgCGGUCGUAGUg-----CGCGuaGCCGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 115383 | 0.75 | 0.435982 |
Target: 5'- -gGCCGGCAUgugcaGgGCGCGggCGGCCGCc -3' miRNA: 3'- ggCGGUCGUAg----UgCGCGUa-GCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 43837 | 0.74 | 0.444506 |
Target: 5'- gCCGCCGGCcgcgggcccGUCACagGCGCccCGGCCGg -3' miRNA: 3'- -GGCGGUCG---------UAGUG--CGCGuaGCCGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 224080 | 0.74 | 0.444506 |
Target: 5'- uCCuCCGGCGggCGCGCGCGccggCGGUCGCc -3' miRNA: 3'- -GGcGGUCGUa-GUGCGCGUa---GCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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