miRNA display CGI


Results 21 - 40 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 146151 0.66 0.899886
Target:  5'- uCCGCgAGCG-CGaggagaGCGagGUgGGCCGCg -3'
miRNA:   3'- -GGCGgUCGUaGUg-----CGCg-UAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 40340 0.66 0.899886
Target:  5'- gCCGCCAGUuuggccaggAUCACggcgcuGCGCAg-GGCCu- -3'
miRNA:   3'- -GGCGGUCG---------UAGUG------CGCGUagCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 132104 0.66 0.899886
Target:  5'- aUCGCCuAGUAUUugagGCgGCGCAgcgCGGCCu- -3'
miRNA:   3'- -GGCGG-UCGUAG----UG-CGCGUa--GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 140111 0.66 0.899886
Target:  5'- cCCGCCuccucCAUCA-GCgGCcgCGGCgGCg -3'
miRNA:   3'- -GGCGGuc---GUAGUgCG-CGuaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 131872 0.66 0.899886
Target:  5'- aCgGCCAuCGUgcCGCGCGUGUCGGgCaGCg -3'
miRNA:   3'- -GgCGGUcGUA--GUGCGCGUAGCCgG-CG- -5'
14035 5' -59.1 NC_003521.1 + 76317 0.66 0.89928
Target:  5'- aCGUCGcGCGUCACGCccuugacgaacucGCA--GGCCGUc -3'
miRNA:   3'- gGCGGU-CGUAGUGCG-------------CGUagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 222645 0.66 0.89928
Target:  5'- -gGCCGGCAg-GCGCGCAgCGccuccacGCUGCc -3'
miRNA:   3'- ggCGGUCGUagUGCGCGUaGC-------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 210344 0.66 0.898062
Target:  5'- aCUGCUgguggugacggaggGGCAggugCGCGUcaucgGCAcccUCGGCCGCc -3'
miRNA:   3'- -GGCGG--------------UCGUa---GUGCG-----CGU---AGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 20298 0.66 0.893736
Target:  5'- cUCGCCGGCGcCAUGCaGCAccaggaGGCCa- -3'
miRNA:   3'- -GGCGGUCGUaGUGCG-CGUag----CCGGcg -5'
14035 5' -59.1 NC_003521.1 + 214806 0.66 0.893736
Target:  5'- aCCGCCgucgGGCGcCGgGCGCGgcgaCGGCgGUu -3'
miRNA:   3'- -GGCGG----UCGUaGUgCGCGUa---GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 131345 0.66 0.893736
Target:  5'- uUCGCCccguGcCGUCGCaaGCuCAUCGGCgGCa -3'
miRNA:   3'- -GGCGGu---C-GUAGUG--CGcGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 223776 0.66 0.893736
Target:  5'- gCUGUCGGCgccGUUAcCGC-CGUgGGCCGCc -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGcGUAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 195097 0.66 0.893736
Target:  5'- uCgGCCAGUccGUCGCGgGgguccucguCAUCGucGCCGCg -3'
miRNA:   3'- -GgCGGUCG--UAGUGCgC---------GUAGC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 95772 0.66 0.893736
Target:  5'- gCCGcCCAGacgGUCAuCGUGCcgcUCGGCCacGCg -3'
miRNA:   3'- -GGC-GGUCg--UAGU-GCGCGu--AGCCGG--CG- -5'
14035 5' -59.1 NC_003521.1 + 16990 0.66 0.893736
Target:  5'- gCCGCagggaCAGCAggCGCcCGCGguggCGGCgGCg -3'
miRNA:   3'- -GGCG-----GUCGUa-GUGcGCGUa---GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 90451 0.66 0.893736
Target:  5'- uUCGCCAGUAgcagucgacCACGgucCGCAcgcagaccUCGGCCGa -3'
miRNA:   3'- -GGCGGUCGUa--------GUGC---GCGU--------AGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 119736 0.66 0.893736
Target:  5'- aCCGaCCAGU-UC-CGCGUAUgCGGCaGCu -3'
miRNA:   3'- -GGC-GGUCGuAGuGCGCGUA-GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 17423 0.66 0.893736
Target:  5'- gCGCCggGGCGccaCACGgccCGCGUCGgggcGCCGCg -3'
miRNA:   3'- gGCGG--UCGUa--GUGC---GCGUAGC----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 36802 0.66 0.893736
Target:  5'- gCGCCuuucgGGCAggccgugaUCACGCGCcacgGGCCGg -3'
miRNA:   3'- gGCGG-----UCGU--------AGUGCGCGuag-CCGGCg -5'
14035 5' -59.1 NC_003521.1 + 128502 0.66 0.893736
Target:  5'- gCGCCGGCcugcgacagcgaGUCGCuGgGCAggugCGGCUGg -3'
miRNA:   3'- gGCGGUCG------------UAGUG-CgCGUa---GCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.