miRNA display CGI


Results 21 - 40 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 230282 0.68 0.800231
Target:  5'- aCGUCAGCAcCACuaGCAguccauacuugaaugUCGcGCCGCc -3'
miRNA:   3'- gGCGGUCGUaGUGcgCGU---------------AGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 229521 0.66 0.874077
Target:  5'- aCGauggucaCAGCAgaaGCGguCGCAcCGGCCGCa -3'
miRNA:   3'- gGCg------GUCGUag-UGC--GCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 229229 0.68 0.796843
Target:  5'- cCCGCCAGUGg-ACcCGCG--GGCCGCg -3'
miRNA:   3'- -GGCGGUCGUagUGcGCGUagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 228697 0.67 0.867133
Target:  5'- gCCGCC-GCAccCGaaggaGCGCggCGGCgGCa -3'
miRNA:   3'- -GGCGGuCGUa-GUg----CGCGuaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 227974 0.66 0.887382
Target:  5'- aCCGCU-GCGUCugcuCGCGCAcgugaucgUUGaGCUGCu -3'
miRNA:   3'- -GGCGGuCGUAGu---GCGCGU--------AGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 226353 0.67 0.860002
Target:  5'- cCCGCgGGUAgCGC-CGCGggagCGGCgGCu -3'
miRNA:   3'- -GGCGgUCGUaGUGcGCGUa---GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 226251 0.72 0.590304
Target:  5'- gCGUguGCAgcuUCACGuCGCAguucaggaugcgcUCGGCCGUg -3'
miRNA:   3'- gGCGguCGU---AGUGC-GCGU-------------AGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 226050 0.7 0.69703
Target:  5'- gCaCCAGCAccUCggccacgaagGCGCGCccCGGCCGCg -3'
miRNA:   3'- gGcGGUCGU--AG----------UGCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 225874 0.68 0.779592
Target:  5'- gUGCCGGUgcucCAUGCGCGUCuggcgcuGCCGCu -3'
miRNA:   3'- gGCGGUCGua--GUGCGCGUAGc------CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 225772 0.66 0.893736
Target:  5'- gCGCC-GCu---CGCGC-UCGcGCCGCu -3'
miRNA:   3'- gGCGGuCGuaguGCGCGuAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 225589 0.76 0.386903
Target:  5'- gCGCuCGGCGgccuCGCGC-UCGGCCGCc -3'
miRNA:   3'- gGCG-GUCGUagu-GCGCGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 225517 0.68 0.805273
Target:  5'- cCCGCuCGGCGcCGuCGCGCGUCGacgaaCGCu -3'
miRNA:   3'- -GGCG-GUCGUaGU-GCGCGUAGCcg---GCG- -5'
14035 5' -59.1 NC_003521.1 + 224115 0.83 0.149966
Target:  5'- cUCGCCGcGCAUCACGCGCGUCuGCCa- -3'
miRNA:   3'- -GGCGGU-CGUAGUGCGCGUAGcCGGcg -5'
14035 5' -59.1 NC_003521.1 + 224080 0.74 0.444506
Target:  5'- uCCuCCGGCGggCGCGCGCGccggCGGUCGCc -3'
miRNA:   3'- -GGcGGUCGUa-GUGCGCGUa---GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 223776 0.66 0.893736
Target:  5'- gCUGUCGGCgccGUUAcCGC-CGUgGGCCGCc -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGcGUAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 223658 0.72 0.562616
Target:  5'- gCUGCCAGCG-C-UGCGCcUCGGCCucGCg -3'
miRNA:   3'- -GGCGGUCGUaGuGCGCGuAGCCGG--CG- -5'
14035 5' -59.1 NC_003521.1 + 223590 0.68 0.813564
Target:  5'- aCGCCGGC-UCGCuugccauaccGCGCGaCGGCgaCGCu -3'
miRNA:   3'- gGCGGUCGuAGUG----------CGCGUaGCCG--GCG- -5'
14035 5' -59.1 NC_003521.1 + 223475 0.72 0.58551
Target:  5'- gCGCCGGCGUCACggcccgggaggugggGCGgAUCGGCg-- -3'
miRNA:   3'- gGCGGUCGUAGUG---------------CGCgUAGCCGgcg -5'
14035 5' -59.1 NC_003521.1 + 223459 0.7 0.677953
Target:  5'- gCGCCAGUAgcaACGaGUcUCGGCCGUu -3'
miRNA:   3'- gGCGGUCGUag-UGCgCGuAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 223223 0.67 0.852687
Target:  5'- aCGCC-GCGacgcCugGCGCGUCcaGCCGUg -3'
miRNA:   3'- gGCGGuCGUa---GugCGCGUAGc-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.