miRNA display CGI


Results 1 - 20 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 240556 0.69 0.725263
Target:  5'- uCCGCgCAGCgaguGUgGCGCGUGUUuGCCGUg -3'
miRNA:   3'- -GGCG-GUCG----UAgUGCGCGUAGcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 240478 0.72 0.562616
Target:  5'- gCCGCCuccGGCAgcUCACGCuugGUUGGCCGUu -3'
miRNA:   3'- -GGCGG---UCGU--AGUGCGcg-UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 240412 0.7 0.7065
Target:  5'- cUCGCCAGCA-CACaGCuGCAgucaCaGCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUG-CG-CGUa---GcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 240153 0.72 0.600874
Target:  5'- gCGCUGGC-UCAUG-GCGUCGGCCugaGCg -3'
miRNA:   3'- gGCGGUCGuAGUGCgCGUAGCCGG---CG- -5'
14035 5' -59.1 NC_003521.1 + 239859 0.7 0.710272
Target:  5'- aCCGCCGGCcUCucguugcgcccacuUGCGCAuggcUCGGCUGg -3'
miRNA:   3'- -GGCGGUCGuAGu-------------GCGCGU----AGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 239791 0.7 0.687512
Target:  5'- aCGCCGGcCAUCugGCuGCG-CGGCgugaugCGCg -3'
miRNA:   3'- gGCGGUC-GUAGugCG-CGUaGCCG------GCG- -5'
14035 5' -59.1 NC_003521.1 + 239754 0.7 0.687512
Target:  5'- gUCGCgCGGCGagagCugGCGCAggUCGGUgGCc -3'
miRNA:   3'- -GGCG-GUCGUa---GugCGCGU--AGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 239544 0.71 0.624009
Target:  5'- uUCGUCGGCGUCGCgggcggcuagggucaGCGUGUUGcGCUGCa -3'
miRNA:   3'- -GGCGGUCGUAGUG---------------CGCGUAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 239227 0.67 0.829699
Target:  5'- gCGCUGGUggauGUgGCGCuGCA-CGGCCGUc -3'
miRNA:   3'- gGCGGUCG----UAgUGCG-CGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 238513 0.67 0.83753
Target:  5'- -gGCCGGCGcgagCAgGUGCGagagcucgUCGGCCaGCg -3'
miRNA:   3'- ggCGGUCGUa---GUgCGCGU--------AGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 237146 0.7 0.69703
Target:  5'- gCGUCAGCAUCcgACGaggGUccCGGCCGCc -3'
miRNA:   3'- gGCGGUCGUAG--UGCg--CGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 236969 0.68 0.779592
Target:  5'- gCGUCGGCAacaggUACG-GCGUCGGCagaGCu -3'
miRNA:   3'- gGCGGUCGUa----GUGCgCGUAGCCGg--CG- -5'
14035 5' -59.1 NC_003521.1 + 236484 0.67 0.845194
Target:  5'- aCCGCCGGCggcgGUgGCGCcagGCAUggaCGGUCGa -3'
miRNA:   3'- -GGCGGUCG----UAgUGCG---CGUA---GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 234757 0.68 0.78828
Target:  5'- aCgGCUGGCGugaUCACGCccuGCGg-GGCCGCu -3'
miRNA:   3'- -GgCGGUCGU---AGUGCG---CGUagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 234670 0.69 0.725263
Target:  5'- -aGCCGGagcCG-GCGCAUUGGCUGCa -3'
miRNA:   3'- ggCGGUCguaGUgCGCGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 234197 0.67 0.867133
Target:  5'- -gGCCaAGCGUU-CGCGCG-CGGCCu- -3'
miRNA:   3'- ggCGG-UCGUAGuGCGCGUaGCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 233839 0.67 0.860002
Target:  5'- aCCGCCGugucguGCGUC-UGCGCGUCcuGUCGUc -3'
miRNA:   3'- -GGCGGU------CGUAGuGCGCGUAGc-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 233165 0.66 0.893736
Target:  5'- aCCGCUguccGCGcCGC-CGUggCGGCCGCc -3'
miRNA:   3'- -GGCGGu---CGUaGUGcGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 233084 0.66 0.899886
Target:  5'- gCCGCC-GCcUC-CGcCGC-UCGcGCCGCc -3'
miRNA:   3'- -GGCGGuCGuAGuGC-GCGuAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 232424 0.66 0.893736
Target:  5'- aCGCCAGCG-CcUGCGUGUCGGagGUc -3'
miRNA:   3'- gGCGGUCGUaGuGCGCGUAGCCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.