miRNA display CGI


Results 41 - 60 of 655 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 133377 0.78 0.300268
Target:  5'- uCCGCCGGCA-CA-GCGCggCGGuCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUgCGCGuaGCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 168970 0.78 0.281093
Target:  5'- cCCGCU-GCuGUCgccgACGCGCGUCGGUCGCg -3'
miRNA:   3'- -GGCGGuCG-UAG----UGCGCGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 165662 0.8 0.227829
Target:  5'- gCCGCgCGGCAcCAUGCGUccaggcauccccagGUCGGCCGCc -3'
miRNA:   3'- -GGCG-GUCGUaGUGCGCG--------------UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 224115 0.83 0.149966
Target:  5'- cUCGCCGcGCAUCACGCGCGUCuGCCa- -3'
miRNA:   3'- -GGCGGU-CGUAGUGCGCGUAGcCGGcg -5'
14035 5' -59.1 NC_003521.1 + 56797 0.85 0.114618
Target:  5'- gCCGCCcaaccGGCGUCGCGCGCGaacgagUCGGCCGa -3'
miRNA:   3'- -GGCGG-----UCGUAGUGCGCGU------AGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 116853 0.75 0.419221
Target:  5'- gCCGCCGaccGCGacgaccugCGCGCGCAguggcgCGGCUGCg -3'
miRNA:   3'- -GGCGGU---CGUa-------GUGCGCGUa-----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 30228 0.75 0.427553
Target:  5'- gCCGUUGGCGUCGCGCuGCAgguccgcgCGGuuGCc -3'
miRNA:   3'- -GGCGGUCGUAGUGCG-CGUa-------GCCggCG- -5'
14035 5' -59.1 NC_003521.1 + 133964 0.74 0.479503
Target:  5'- aCCGUacgGGCGUcCAUGCGCGgacgcUGGCCGCg -3'
miRNA:   3'- -GGCGg--UCGUA-GUGCGCGUa----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 125034 0.74 0.479503
Target:  5'- uCCGCgGGUAUC-CGCGCGUgUGGuCCGUg -3'
miRNA:   3'- -GGCGgUCGUAGuGCGCGUA-GCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 204439 0.74 0.479503
Target:  5'- gCCGCCAGCAgCACGgaaaGCAgcacgCGaaGCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUGCg---CGUa----GC--CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 168525 0.74 0.470624
Target:  5'- aCGCCAGCAggCugGCGgcCAgcgCGGCgGCg -3'
miRNA:   3'- gGCGGUCGUa-GugCGC--GUa--GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 153634 0.74 0.46183
Target:  5'- gCGCCAGCGggugCgucucgguggaGCGCuGCA-CGGCCGCg -3'
miRNA:   3'- gGCGGUCGUa---G-----------UGCG-CGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 112793 0.74 0.46183
Target:  5'- gCCGCCuacgggCACGCGCucugggaCGGCCGCg -3'
miRNA:   3'- -GGCGGucgua-GUGCGCGua-----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 124433 0.74 0.46183
Target:  5'- cUCGuCCGGCGagACGUGguUgGGCCGCg -3'
miRNA:   3'- -GGC-GGUCGUagUGCGCguAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 113224 0.74 0.453123
Target:  5'- gCGCUcgGGCcUCACGUGCAUCacggGGCUGCu -3'
miRNA:   3'- gGCGG--UCGuAGUGCGCGUAG----CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 43837 0.74 0.444506
Target:  5'- gCCGCCGGCcgcgggcccGUCACagGCGCccCGGCCGg -3'
miRNA:   3'- -GGCGGUCG---------UAGUG--CGCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 224080 0.74 0.444506
Target:  5'- uCCuCCGGCGggCGCGCGCGccggCGGUCGCc -3'
miRNA:   3'- -GGcGGUCGUa-GUGCGCGUa---GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 115383 0.75 0.435982
Target:  5'- -gGCCGGCAUgugcaGgGCGCGggCGGCCGCc -3'
miRNA:   3'- ggCGGUCGUAg----UgCGCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 145714 0.75 0.435982
Target:  5'- -gGCCAcGCucaaGCGCGCG-CGGCCGCu -3'
miRNA:   3'- ggCGGU-CGuag-UGCGCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 153107 0.75 0.427553
Target:  5'- gCCGCCGGg--CGCGCGCGaCGGCaGCa -3'
miRNA:   3'- -GGCGGUCguaGUGCGCGUaGCCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.