miRNA display CGI


Results 61 - 80 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 38999 0.67 0.829699
Target:  5'- gCGCUGGUggauGUgGCGCuGCA-CGGCCGUc -3'
miRNA:   3'- gGCGGUCG----UAgUGCG-CGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 39317 0.71 0.624009
Target:  5'- uUCGUCGGCGUCGCgggcggcuagggucaGCGUGUUGcGCUGCa -3'
miRNA:   3'- -GGCGGUCGUAGUG---------------CGCGUAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 39440 0.67 0.852687
Target:  5'- gCUGCCGGCcgagCccgGCGC-CGagGGCCGCg -3'
miRNA:   3'- -GGCGGUCGua--G---UGCGcGUagCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 39527 0.7 0.687512
Target:  5'- gUCGCgCGGCGagagCugGCGCAggUCGGUgGCc -3'
miRNA:   3'- -GGCG-GUCGUa---GugCGCGU--AGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 39564 0.7 0.687512
Target:  5'- aCGCCGGcCAUCugGCuGCG-CGGCgugaugCGCg -3'
miRNA:   3'- gGCGGUC-GUAGugCG-CGUaGCCG------GCG- -5'
14035 5' -59.1 NC_003521.1 + 39632 0.7 0.710272
Target:  5'- aCCGCCGGCcUCucguugcgcccacuUGCGCAuggcUCGGCUGg -3'
miRNA:   3'- -GGCGGUCGuAGu-------------GCGCGU----AGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 39925 0.72 0.600874
Target:  5'- gCGCUGGC-UCAUG-GCGUCGGCCugaGCg -3'
miRNA:   3'- gGCGGUCGuAGUGCgCGUAGCCGG---CG- -5'
14035 5' -59.1 NC_003521.1 + 39941 0.73 0.543724
Target:  5'- uCCGCCAGCAgcuccaGCaGCGUAUCGGaggaaUCGCc -3'
miRNA:   3'- -GGCGGUCGUag----UG-CGCGUAGCC-----GGCG- -5'
14035 5' -59.1 NC_003521.1 + 40250 0.72 0.562616
Target:  5'- gCCGCCuccGGCAgcUCACGCuugGUUGGCCGUu -3'
miRNA:   3'- -GGCGG---UCGU--AGUGCGcg-UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 40340 0.66 0.899886
Target:  5'- gCCGCCAGUuuggccaggAUCACggcgcuGCGCAg-GGCCu- -3'
miRNA:   3'- -GGCGGUCG---------UAGUG------CGCGUagCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 40436 0.7 0.687512
Target:  5'- aCgGCCAGgugcUCGCGCGCucuagccCGGUCGCg -3'
miRNA:   3'- -GgCGGUCgu--AGUGCGCGua-----GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 41317 0.7 0.7065
Target:  5'- uUCGCCAcaGUCGCGCuCAUCG-CCGCc -3'
miRNA:   3'- -GGCGGUcgUAGUGCGcGUAGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 42615 0.72 0.562616
Target:  5'- gCCGCCGGCG--GCGC-CGUCG-CCGCc -3'
miRNA:   3'- -GGCGGUCGUagUGCGcGUAGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 42976 0.67 0.829699
Target:  5'- cCCGCCGGCGccCACcgacgaccUGCAgaCGGCCGUg -3'
miRNA:   3'- -GGCGGUCGUa-GUGc-------GCGUa-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 43370 0.72 0.562616
Target:  5'- uCCGCCAGag-CAUGCGC-UgGcGCCGCc -3'
miRNA:   3'- -GGCGGUCguaGUGCGCGuAgC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 43474 0.67 0.845194
Target:  5'- -gGCCAGCGcggCGgcCGUGC--UGGCCGCg -3'
miRNA:   3'- ggCGGUCGUa--GU--GCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 43563 0.69 0.7699
Target:  5'- gCCGCCGGCGcCGCGUcaaGCAccgcuccUCgGGCgGCg -3'
miRNA:   3'- -GGCGGUCGUaGUGCG---CGU-------AG-CCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 43837 0.74 0.444506
Target:  5'- gCCGCCGGCcgcgggcccGUCACagGCGCccCGGCCGg -3'
miRNA:   3'- -GGCGGUCG---------UAGUG--CGCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 44100 0.71 0.628836
Target:  5'- gCCGCCAccacCGUCGC-CGCcggugaaGUCGGCCGUc -3'
miRNA:   3'- -GGCGGUc---GUAGUGcGCG-------UAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 44157 0.68 0.779592
Target:  5'- gUCGUCgAGCAgcagCugGCGcCGUCGGuacuCCGCg -3'
miRNA:   3'- -GGCGG-UCGUa---GugCGC-GUAGCC----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.