miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 224299 0.68 0.387024
Target:  5'- -gGUCCguugcgcuccagCCGAGCCGaGcGCCGCa-GCCCg -3'
miRNA:   3'- aaCAGG------------GGCUCGGC-C-CGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 35604 0.68 0.387024
Target:  5'- -gGUCCCCuGAuCCGc-CUGCCGGCCCu -3'
miRNA:   3'- aaCAGGGG-CUcGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 1383 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 154426 0.68 0.379542
Target:  5'- -cGUcCCCCGcGUCGa-CCGCUGGCCCu -3'
miRNA:   3'- aaCA-GGGGCuCGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 201610 0.68 0.379542
Target:  5'- cUGUCCCCGAGCCcGcGCUGCUGcggacGCUg -3'
miRNA:   3'- aACAGGGGCUCGGcC-CGGCGGC-----CGGg -5'
14058 5' -67.6 NC_003521.1 + 43860 0.68 0.379542
Target:  5'- -aGgcgCCCCGGccggcucCCGGGCCGUC-GCCCa -3'
miRNA:   3'- aaCa--GGGGCUc------GGCCCGGCGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 226076 0.68 0.379542
Target:  5'- -cG-CCCCG-GCC--GCgGCCGGCCCg -3'
miRNA:   3'- aaCaGGGGCuCGGccCGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 179454 0.68 0.379542
Target:  5'- -gGUCCuuGAGCuguugcaggaagCGGGCCGUgGGCa- -3'
miRNA:   3'- aaCAGGggCUCG------------GCCCGGCGgCCGgg -5'
14058 5' -67.6 NC_003521.1 + 90074 0.68 0.379542
Target:  5'- --cUCgCgGAGCagucCGGGCaGCCGGCCCa -3'
miRNA:   3'- aacAGgGgCUCG----GCCCGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 167832 0.68 0.379542
Target:  5'- ---cCCCCGGGCaCGaccGCCGCgGGCUCg -3'
miRNA:   3'- aacaGGGGCUCG-GCc--CGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 213014 0.68 0.372156
Target:  5'- cUGUaCCauGGcGCCGGGCgaGCCGGCCg -3'
miRNA:   3'- aACA-GGggCU-CGGCCCGg-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 151649 0.68 0.372156
Target:  5'- -cGUCCagcaGGGCCaGGCC-CaCGGCCCa -3'
miRNA:   3'- aaCAGGgg--CUCGGcCCGGcG-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 153083 0.69 0.364869
Target:  5'- -gGggCCCGGGCCGGggcccaccacGCCGCCGGgCg -3'
miRNA:   3'- aaCagGGGCUCGGCC----------CGGCGGCCgGg -5'
14058 5' -67.6 NC_003521.1 + 77598 0.69 0.364869
Target:  5'- -cGUCCgCGAGUCccaGGCCGCCGGagCUa -3'
miRNA:   3'- aaCAGGgGCUCGGc--CCGGCGGCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 87863 0.69 0.357682
Target:  5'- gUGUCCUCGcaggcgcuGGCCaGGCCGuuGGCg- -3'
miRNA:   3'- aACAGGGGC--------UCGGcCCGGCggCCGgg -5'
14058 5' -67.6 NC_003521.1 + 196435 0.69 0.357682
Target:  5'- cUGUCgCCCGGGUCGgccGGCUGCCGcGCg- -3'
miRNA:   3'- aACAG-GGGCUCGGC---CCGGCGGC-CGgg -5'
14058 5' -67.6 NC_003521.1 + 131039 0.69 0.357682
Target:  5'- -cGUCuCCUGGGCgGcGGCgGCgGGCCUc -3'
miRNA:   3'- aaCAG-GGGCUCGgC-CCGgCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 53634 0.69 0.357682
Target:  5'- aUGUCCCCGAuGCaggCGGGCCGUC--UCCg -3'
miRNA:   3'- aACAGGGGCU-CG---GCCCGGCGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 74098 0.69 0.353417
Target:  5'- --uUCCCCGccaaggaugauagcuGGCUGuGGCCGCUGGUCa -3'
miRNA:   3'- aacAGGGGC---------------UCGGC-CCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 119885 0.69 0.350594
Target:  5'- cUG-CCCCucGCCGGaGCCGCC-GCCg -3'
miRNA:   3'- aACaGGGGcuCGGCC-CGGCGGcCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.