miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 205812 0.67 0.433902
Target:  5'- -cGUCCgCCGGGCaCGacgcaagcGCuCGCUGGCCCc -3'
miRNA:   3'- aaCAGG-GGCUCG-GCc-------CG-GCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 118201 0.67 0.433902
Target:  5'- -cGgggCCgCCGAGCgCGcGGCCGCC-GCCg -3'
miRNA:   3'- aaCa--GG-GGCUCG-GC-CCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 1439 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 201666 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 101913 0.67 0.433902
Target:  5'- -gGUCCgacaCCGAGCCGGcGUacuCGCCGGUg- -3'
miRNA:   3'- aaCAGG----GGCUCGGCC-CG---GCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 63529 0.67 0.42586
Target:  5'- -gGUCUUCGAGCCcuGGGCCcagcgucacggaGCC-GCCCu -3'
miRNA:   3'- aaCAGGGGCUCGG--CCCGG------------CGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 114503 0.67 0.42586
Target:  5'- cUGUCC----GUCGuGGCCGCCGuGCCCa -3'
miRNA:   3'- aACAGGggcuCGGC-CCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 129812 0.67 0.42586
Target:  5'- -cGUCaagUUGGuGCUGGGCCGCCugcugcuggGGCCCg -3'
miRNA:   3'- aaCAGg--GGCU-CGGCCCGGCGG---------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 22387 0.67 0.42586
Target:  5'- aUGUCCuCCGugguGCCGccgcuGUCGCUGGCCa -3'
miRNA:   3'- aACAGG-GGCu---CGGCc----CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 95762 0.67 0.423465
Target:  5'- -aGUCgUCCGAGCCGcccagacggucaucGuGCCGCuCGGCCa -3'
miRNA:   3'- aaCAG-GGGCUCGGC--------------C-CGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 123115 0.68 0.417908
Target:  5'- -cGUCCUC--GCCGGGCCGCUGuaCg -3'
miRNA:   3'- aaCAGGGGcuCGGCCCGGCGGCcgGg -5'
14058 5' -67.6 NC_003521.1 + 223315 0.68 0.417908
Target:  5'- -cG-CCgCCGGGCCGGGaaCCGCCGuGaCCg -3'
miRNA:   3'- aaCaGG-GGCUCGGCCC--GGCGGC-CgGG- -5'
14058 5' -67.6 NC_003521.1 + 209817 0.68 0.410047
Target:  5'- -cGUCCUC--GCCGGcGCCGUCGucGCCCc -3'
miRNA:   3'- aaCAGGGGcuCGGCC-CGGCGGC--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 101557 0.68 0.410047
Target:  5'- cUGUCCCUGAGuCCGaaaGCUGUCGaGUCCc -3'
miRNA:   3'- aACAGGGGCUC-GGCc--CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 158051 0.68 0.402278
Target:  5'- -cGUCCCUGuGCUccacGGcCCGCCGGUCg -3'
miRNA:   3'- aaCAGGGGCuCGGc---CC-GGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 48366 0.68 0.402278
Target:  5'- -cGUCCUgGAaaCCGGcGCCGCCGccauGCCCc -3'
miRNA:   3'- aaCAGGGgCUc-GGCC-CGGCGGC----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 126849 0.68 0.402278
Target:  5'- -gGUgCCCG-GCC-GGCCGCCuGCCg -3'
miRNA:   3'- aaCAgGGGCuCGGcCCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 43535 0.68 0.397662
Target:  5'- --cUCCCguCGAGCCGcccucccgcuccccGCCGCCGGCgCCg -3'
miRNA:   3'- aacAGGG--GCUCGGCc-------------CGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 238828 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 38601 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.