Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 112387 | 0.67 | 0.475379 |
Target: 5'- -cGUCCaCCuGGCUGGcgcagugcGCCGaCCGGCCg -3' miRNA: 3'- aaCAGG-GGcUCGGCC--------CGGC-GGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 209321 | 0.67 | 0.475379 |
Target: 5'- cUUG-CCCaCGGGCUGGGCCuguGCCaaCCCg -3' miRNA: 3'- -AACaGGG-GCUCGGCCCGG---CGGccGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 48597 | 0.67 | 0.475379 |
Target: 5'- --cUCCCgCGGcGCCGGGUCGCaagaaacagGGUCCg -3' miRNA: 3'- aacAGGG-GCU-CGGCCCGGCGg--------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 59340 | 0.67 | 0.475379 |
Target: 5'- -gGUCCuucaCCGAGCUgggauGGGCCGUCuGCgCCg -3' miRNA: 3'- aaCAGG----GGCUCGG-----CCCGGCGGcCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 74478 | 0.67 | 0.471987 |
Target: 5'- -cGUCCUgggcuuCGAGCUGGuGCCGCCcuucuacuucaacGCCCu -3' miRNA: 3'- aaCAGGG------GCUCGGCC-CGGCGGc------------CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 15235 | 0.67 | 0.466922 |
Target: 5'- -----gCCGAGCgCGaGGCCGCCGaGCgCCa -3' miRNA: 3'- aacaggGGCUCG-GC-CCGGCGGC-CG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 191698 | 0.67 | 0.466922 |
Target: 5'- -aGUCCCCGcAGCagCGGcGCCG-CGGUCa -3' miRNA: 3'- aaCAGGGGC-UCG--GCC-CGGCgGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 164002 | 0.67 | 0.466922 |
Target: 5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3' miRNA: 3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 103225 | 0.67 | 0.466922 |
Target: 5'- -gGUCgCCG-GCCaGGCgG-CGGCCCa -3' miRNA: 3'- aaCAGgGGCuCGGcCCGgCgGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 25618 | 0.67 | 0.458544 |
Target: 5'- --cUUCaCCGGGCUGGcGCUGCUGGCgCg -3' miRNA: 3'- aacAGG-GGCUCGGCC-CGGCGGCCGgG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 202594 | 0.67 | 0.458544 |
Target: 5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3' miRNA: 3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 2367 | 0.67 | 0.458544 |
Target: 5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3' miRNA: 3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 55240 | 0.67 | 0.458544 |
Target: 5'- -aG-CCCCGAGCgGcucGCCGgCGaGCCCg -3' miRNA: 3'- aaCaGGGGCUCGgCc--CGGCgGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 222219 | 0.67 | 0.458544 |
Target: 5'- cUUGUCCugaCCGcGGCUGGGCCGCaGGaaCCa -3' miRNA: 3'- -AACAGG---GGC-UCGGCCCGGCGgCCg-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 13195 | 0.67 | 0.450246 |
Target: 5'- gUGcCgCUCGGGCCgccguguuggaGGGCCGaCCGGCgCCc -3' miRNA: 3'- aACaG-GGGCUCGG-----------CCCGGC-GGCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 188470 | 0.67 | 0.450246 |
Target: 5'- -cGcCUCCGAGCUacgagcaGGCCGUgGGCCUg -3' miRNA: 3'- aaCaGGGGCUCGGc------CCGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 111680 | 0.67 | 0.450246 |
Target: 5'- --aUCCCCuucGAGCUGaGcGCCGCCuGCCUg -3' miRNA: 3'- aacAGGGG---CUCGGC-C-CGGCGGcCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 148623 | 0.67 | 0.442031 |
Target: 5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3' miRNA: 3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 137152 | 0.67 | 0.442031 |
Target: 5'- --cUCgCCCGccauGGCCGcGGCCGCagCGGCCg -3' miRNA: 3'- aacAG-GGGC----UCGGC-CCGGCG--GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 145857 | 0.67 | 0.442031 |
Target: 5'- -cGUCUCUGGGCCcGGCgGCgggCGGCgCCg -3' miRNA: 3'- aaCAGGGGCUCGGcCCGgCG---GCCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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