miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 94955 0.7 0.310188
Target:  5'- -cGUCgUCGGcGCCGcccGCCGCCGGgCCCa -3'
miRNA:   3'- aaCAGgGGCU-CGGCc--CGGCGGCC-GGG- -5'
14058 5' -67.6 NC_003521.1 + 135181 0.7 0.310188
Target:  5'- ---cCCCCGAGCUGGGCuucaCGCacacGCCCg -3'
miRNA:   3'- aacaGGGGCUCGGCCCG----GCGgc--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 17414 0.7 0.316669
Target:  5'- uUUGaCgCCGcGCCGGGgCGCCacacGGCCCg -3'
miRNA:   3'- -AACaGgGGCuCGGCCCgGCGG----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 43814 0.69 0.322588
Target:  5'- aUGUCgCagcAGCCGGgucagccGCCGCCGGCCg -3'
miRNA:   3'- aACAGgGgc-UCGGCC-------CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 50870 0.69 0.323251
Target:  5'- -gGUCCCUGAGgaaCGGcUCGgCGGCCCg -3'
miRNA:   3'- aaCAGGGGCUCg--GCCcGGCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 17351 0.69 0.329262
Target:  5'- ---cUCCCGGGCCGugacgccGGCgCGgCGGCCCa -3'
miRNA:   3'- aacaGGGGCUCGGC-------CCG-GCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 187620 0.69 0.329262
Target:  5'- cUG-CCgggCGAGCCGGGCCGCgcgccgcUGGCCa -3'
miRNA:   3'- aACaGGg--GCUCGGCCCGGCG-------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 201380 0.69 0.336721
Target:  5'- -gGcCCUCGGcGCCGGGCUcgGCCGGCa- -3'
miRNA:   3'- aaCaGGGGCU-CGGCCCGG--CGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 118916 0.69 0.336721
Target:  5'- ---cCCCaCGGGCCGGGCCaUCuGCCCc -3'
miRNA:   3'- aacaGGG-GCUCGGCCCGGcGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 142558 0.69 0.343607
Target:  5'- cUUGUCgCCC--GCCaGGCuCGCCGuGCCCg -3'
miRNA:   3'- -AACAG-GGGcuCGGcCCG-GCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 119983 0.69 0.343607
Target:  5'- -cGUCgaCGAGCCGGgcgacaugcGCCGCUGGCUg -3'
miRNA:   3'- aaCAGggGCUCGGCC---------CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 185570 0.69 0.343607
Target:  5'- uUUGUCCCCc-G-CGGGCuCGCCGGCgagCCg -3'
miRNA:   3'- -AACAGGGGcuCgGCCCG-GCGGCCG---GG- -5'
14058 5' -67.6 NC_003521.1 + 109743 0.69 0.348488
Target:  5'- -cGgagCCCgcgCGAGCCGcGGUCGCCgccaccgcguccgaGGCCCg -3'
miRNA:   3'- aaCa--GGG---GCUCGGC-CCGGCGG--------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 119885 0.69 0.350594
Target:  5'- cUG-CCCCucGCCGGaGCCGCC-GCCg -3'
miRNA:   3'- aACaGGGGcuCGGCC-CGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 196456 0.69 0.350594
Target:  5'- -cGgCCUCGGGCgUGGGCCGCa-GCCCc -3'
miRNA:   3'- aaCaGGGGCUCG-GCCCGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 74098 0.69 0.353417
Target:  5'- --uUCCCCGccaaggaugauagcuGGCUGuGGCCGCUGGUCa -3'
miRNA:   3'- aacAGGGGC---------------UCGGC-CCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 53634 0.69 0.357682
Target:  5'- aUGUCCCCGAuGCaggCGGGCCGUC--UCCg -3'
miRNA:   3'- aACAGGGGCU-CG---GCCCGGCGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 131039 0.69 0.357682
Target:  5'- -cGUCuCCUGGGCgGcGGCgGCgGGCCUc -3'
miRNA:   3'- aaCAG-GGGCUCGgC-CCGgCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 196435 0.69 0.357682
Target:  5'- cUGUCgCCCGGGUCGgccGGCUGCCGcGCg- -3'
miRNA:   3'- aACAG-GGGCUCGGC---CCGGCGGC-CGgg -5'
14058 5' -67.6 NC_003521.1 + 87863 0.69 0.357682
Target:  5'- gUGUCCUCGcaggcgcuGGCCaGGCCGuuGGCg- -3'
miRNA:   3'- aACAGGGGC--------UCGGcCCGGCggCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.