miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 240712 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 61766 0.72 0.235047
Target:  5'- --uUCCCCGucaCCGGgaccGCCGCCGGCuCCg -3'
miRNA:   3'- aacAGGGGCuc-GGCC----CGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 40485 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 59070 0.71 0.245528
Target:  5'- gUUGUCCUCGucGGCCGGaUCGCgCGGCCg -3'
miRNA:   3'- -AACAGGGGC--UCGGCCcGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 74598 0.71 0.256393
Target:  5'- -cGUCCCgCG-GCCGGcgcgccucGCCGCCGcGCCa -3'
miRNA:   3'- aaCAGGG-GCuCGGCC--------CGGCGGC-CGGg -5'
14058 5' -67.6 NC_003521.1 + 66764 0.71 0.261972
Target:  5'- --aUCCCgCGGGUgauGCCGCCGGCCCa -3'
miRNA:   3'- aacAGGG-GCUCGgccCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 113726 0.71 0.267649
Target:  5'- --uUCCacuacgaacaCGGGCUGGGCCGCCucucgucgguGGCCCu -3'
miRNA:   3'- aacAGGg---------GCUCGGCCCGGCGG----------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 151098 0.71 0.273425
Target:  5'- ---cCCUCGGGUCGGGCCGCUGGg-- -3'
miRNA:   3'- aacaGGGGCUCGGCCCGGCGGCCggg -5'
14058 5' -67.6 NC_003521.1 + 100751 0.71 0.273425
Target:  5'- ---aCCCCGAGCUGGGCCuggcgcacucguGCaacgaGGCCUu -3'
miRNA:   3'- aacaGGGGCUCGGCCCGG------------CGg----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 87745 0.71 0.279301
Target:  5'- gUGggCCCCGGcCCGGGCC-CCGGCg- -3'
miRNA:   3'- aACa-GGGGCUcGGCCCGGcGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 29707 0.7 0.285277
Target:  5'- -cGUCCUCGGcGCCuGGCUGCUGaGCCUc -3'
miRNA:   3'- aaCAGGGGCU-CGGcCCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 104814 0.7 0.291353
Target:  5'- cUGaUCCCCGAGaacaCGGGCgUGaCgCGGCCCc -3'
miRNA:   3'- aAC-AGGGGCUCg---GCCCG-GC-G-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 128521 0.7 0.291353
Target:  5'- -aGUCgCUGGGCaGGuGCgGCUGGCCCg -3'
miRNA:   3'- aaCAGgGGCUCGgCC-CGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 36675 0.7 0.29753
Target:  5'- -gGUCUcggCCGAGCUGaGGCCGggcuccggcgcCUGGCCCg -3'
miRNA:   3'- aaCAGG---GGCUCGGC-CCGGC-----------GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 85649 0.7 0.29753
Target:  5'- ---cCCCCGgcAGCCGcGGCCGCCaGCUg -3'
miRNA:   3'- aacaGGGGC--UCGGC-CCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 196279 0.7 0.303176
Target:  5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3'
miRNA:   3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 32878 0.7 0.303808
Target:  5'- uUUGgcgCCCgCGccGCCGGugcuGCCGCCGuGCCCg -3'
miRNA:   3'- -AACa--GGG-GCu-CGGCC----CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 185054 0.7 0.303808
Target:  5'- --aUCUUCGAGCUGuaCCGCCGGCCg -3'
miRNA:   3'- aacAGGGGCUCGGCccGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 88552 0.7 0.303808
Target:  5'- --cUCCUCGGGgCaGGGCaccaGCUGGCCCg -3'
miRNA:   3'- aacAGGGGCUCgG-CCCGg---CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 229070 0.7 0.310188
Target:  5'- -cGUCCCCagggcGAGUCGGGCCcGUcgaugaCGGCCg -3'
miRNA:   3'- aaCAGGGG-----CUCGGCCCGG-CG------GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.