miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 152144 1.08 0.000543
Target:  5'- uUUGUCCCCGAGCCGGGCCGCCGGCCCa -3'
miRNA:   3'- -AACAGGGGCUCGGCCCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 107067 0.86 0.022629
Target:  5'- -cGUCCCCGGaaucGCCGGGCCuGCCGGCCa -3'
miRNA:   3'- aaCAGGGGCU----CGGCCCGG-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 207348 0.79 0.073528
Target:  5'- -cGUCCCuCGGGUCGGcGCgGCCGGCCg -3'
miRNA:   3'- aaCAGGG-GCUCGGCC-CGgCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 186328 0.79 0.075325
Target:  5'- -gGUCCac--GCCGGGCCGCCGGCCa -3'
miRNA:   3'- aaCAGGggcuCGGCCCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 138024 0.78 0.084959
Target:  5'- cUGcCgCCCGAGCUGgcGGCCGCCGGCgCCg -3'
miRNA:   3'- aACaG-GGGCUCGGC--CCGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 120268 0.78 0.088919
Target:  5'- --aUCCCCGGGCgcuccccCGGGaCCGCCGGCCg -3'
miRNA:   3'- aacAGGGGCUCG-------GCCC-GGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 4550 0.78 0.091291
Target:  5'- -gGUCCCCGgggagucacuacGGCCGGGgcacaCGCCGGCCUc -3'
miRNA:   3'- aaCAGGGGC------------UCGGCCCg----GCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 223451 0.77 0.102851
Target:  5'- -gGUCCCucuCGAGuCUGGGCCGCCGcGCCg -3'
miRNA:   3'- aaCAGGG---GCUC-GGCCCGGCGGC-CGGg -5'
14058 5' -67.6 NC_003521.1 + 11925 0.76 0.115778
Target:  5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3'
miRNA:   3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5'
14058 5' -67.6 NC_003521.1 + 236674 0.75 0.15321
Target:  5'- -gGUCCUgGGGaaGGggagaGCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGgCUCggCC-----CGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 201383 0.74 0.175395
Target:  5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3'
miRNA:   3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 1155 0.74 0.175395
Target:  5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3'
miRNA:   3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 89160 0.73 0.201294
Target:  5'- ---aCCCUGgacGGCUGGGCCGUgGGCCUg -3'
miRNA:   3'- aacaGGGGC---UCGGCCCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 112690 0.73 0.201294
Target:  5'- --uUCgCCGAGCgCGGGCCGCCcucGGaCCCc -3'
miRNA:   3'- aacAGgGGCUCG-GCCCGGCGG---CC-GGG- -5'
14058 5' -67.6 NC_003521.1 + 2059 0.73 0.205845
Target:  5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3'
miRNA:   3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 202287 0.73 0.205845
Target:  5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3'
miRNA:   3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 16807 0.72 0.215213
Target:  5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3'
miRNA:   3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5'
14058 5' -67.6 NC_003521.1 + 77964 0.72 0.215213
Target:  5'- -gGUCUUgGAGCC-GGCCGCgGGCUCg -3'
miRNA:   3'- aaCAGGGgCUCGGcCCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 151619 0.72 0.228941
Target:  5'- gUGUCCCCGguuAGCaauucuucuCCGCCGGCCCg -3'
miRNA:   3'- aACAGGGGC---UCGgccc-----GGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 240712 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.