Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 114398 | 0.66 | 0.518741 |
Target: 5'- --aUCCUCGAccGCCuGGCCGCCaucgcgcagGGCCg -3' miRNA: 3'- aacAGGGGCU--CGGcCCGGCGG---------CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 60804 | 0.66 | 0.501193 |
Target: 5'- -gGUCCCgucuccuaCGAGCC--GCUGCUGGCCUu -3' miRNA: 3'- aaCAGGG--------GCUCGGccCGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 167668 | 0.66 | 0.483912 |
Target: 5'- -gGUCgcaggCCGAGgCGGcGCCGCCGccgcuGCCCc -3' miRNA: 3'- aaCAGg----GGCUCgGCC-CGGCGGC-----CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 138057 | 0.66 | 0.52494 |
Target: 5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3' miRNA: 3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 13308 | 0.66 | 0.492518 |
Target: 5'- --aUCCaacaUGAGCCuGGGCUGCCuGCCg -3' miRNA: 3'- aacAGGg---GCUCGG-CCCGGCGGcCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 175768 | 0.66 | 0.518741 |
Target: 5'- -gGUCCCCGGGCuCGuuguuagaGGCauaccccacaGCCucGGCCCu -3' miRNA: 3'- aaCAGGGGCUCG-GC--------CCGg---------CGG--CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 142275 | 0.66 | 0.527605 |
Target: 5'- -cGggCUCGGGCUGGGacCCGCCgccgcugcagcGGCCCa -3' miRNA: 3'- aaCagGGGCUCGGCCC--GGCGG-----------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 196965 | 0.66 | 0.491654 |
Target: 5'- ----gCCCGggagccGGCCGGGgCGCCugugacgGGCCCg -3' miRNA: 3'- aacagGGGC------UCGGCCCgGCGG-------CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 73888 | 0.66 | 0.527605 |
Target: 5'- ----gCCCGAGauCCGcaaGGCCGUgGGCCCc -3' miRNA: 3'- aacagGGGCUC--GGC---CCGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 101370 | 0.66 | 0.517857 |
Target: 5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3' miRNA: 3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 120992 | 0.66 | 0.501193 |
Target: 5'- -cGUCCUCgucgGAGUCGGaGCCGCUGcUCCa -3' miRNA: 3'- aaCAGGGG----CUCGGCC-CGGCGGCcGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 119713 | 0.66 | 0.527605 |
Target: 5'- -cGUCCaCC-AGCCucagcgggauGGCC-CCGGCCCg -3' miRNA: 3'- aaCAGG-GGcUCGGc---------CCGGcGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 92179 | 0.66 | 0.483912 |
Target: 5'- --aUCCCCGccgAGCUcgGGGCCGuuuuucgccgcCCGGCCg -3' miRNA: 3'- aacAGGGGC---UCGG--CCCGGC-----------GGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 126965 | 0.66 | 0.518741 |
Target: 5'- -cGgaaCCCGcGCCGucGUCGCCGGCCg -3' miRNA: 3'- aaCag-GGGCuCGGCc-CGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 149531 | 0.66 | 0.527605 |
Target: 5'- --cUCUUCGAGUCGGGCgGCgCGcGCUCc -3' miRNA: 3'- aacAGGGGCUCGGCCCGgCG-GC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 127772 | 0.66 | 0.518741 |
Target: 5'- --cUCCUCGuAGUCGGGCgGC-GGCCg -3' miRNA: 3'- aacAGGGGC-UCGGCCCGgCGgCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 106105 | 0.66 | 0.483912 |
Target: 5'- -aGgCCUCGGGCaCGGGCgUGgCGGCCg -3' miRNA: 3'- aaCaGGGGCUCG-GCCCG-GCgGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 81712 | 0.66 | 0.501193 |
Target: 5'- -cGUCCCaggaGAGCaCGGaGUCGCCccgcuccaaaaaGGCCa -3' miRNA: 3'- aaCAGGGg---CUCG-GCC-CGGCGG------------CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 91384 | 0.66 | 0.501193 |
Target: 5'- ---aCCCCGGGcCCGGacccCCGacccaaaucCCGGCCCa -3' miRNA: 3'- aacaGGGGCUC-GGCCc---GGC---------GGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 149053 | 0.66 | 0.509935 |
Target: 5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3' miRNA: 3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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