miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 119983 0.69 0.343607
Target:  5'- -cGUCgaCGAGCCGGgcgacaugcGCCGCUGGCUg -3'
miRNA:   3'- aaCAGggGCUCGGCC---------CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 113726 0.71 0.267649
Target:  5'- --uUCCacuacgaacaCGGGCUGGGCCGCCucucgucgguGGCCCu -3'
miRNA:   3'- aacAGGg---------GCUCGGCCCGGCGG----------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 128521 0.7 0.291353
Target:  5'- -aGUCgCUGGGCaGGuGCgGCUGGCCCg -3'
miRNA:   3'- aaCAGgGGCUCGgCC-CGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 104814 0.7 0.291353
Target:  5'- cUGaUCCCCGAGaacaCGGGCgUGaCgCGGCCCc -3'
miRNA:   3'- aAC-AGGGGCUCg---GCCCG-GC-G-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 85649 0.7 0.29753
Target:  5'- ---cCCCCGgcAGCCGcGGCCGCCaGCUg -3'
miRNA:   3'- aacaGGGGC--UCGGC-CCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 88552 0.7 0.303808
Target:  5'- --cUCCUCGGGgCaGGGCaccaGCUGGCCCg -3'
miRNA:   3'- aacAGGGGCUCgG-CCCGg---CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 32878 0.7 0.303808
Target:  5'- uUUGgcgCCCgCGccGCCGGugcuGCCGCCGuGCCCg -3'
miRNA:   3'- -AACa--GGG-GCu-CGGCC----CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 229070 0.7 0.310188
Target:  5'- -cGUCCCCagggcGAGUCGGGCCcGUcgaugaCGGCCg -3'
miRNA:   3'- aaCAGGGG-----CUCGGCCCGG-CG------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 43814 0.69 0.322588
Target:  5'- aUGUCgCagcAGCCGGgucagccGCCGCCGGCCg -3'
miRNA:   3'- aACAGgGgc-UCGGCC-------CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 66764 0.71 0.261972
Target:  5'- --aUCCCgCGGGUgauGCCGCCGGCCCa -3'
miRNA:   3'- aacAGGG-GCUCGgccCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 74598 0.71 0.256393
Target:  5'- -cGUCCCgCG-GCCGGcgcgccucGCCGCCGcGCCa -3'
miRNA:   3'- aaCAGGG-GCuCGGCC--------CGGCGGC-CGGg -5'
14058 5' -67.6 NC_003521.1 + 59070 0.71 0.245528
Target:  5'- gUUGUCCUCGucGGCCGGaUCGCgCGGCCg -3'
miRNA:   3'- -AACAGGGGC--UCGGCCcGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 120268 0.78 0.088919
Target:  5'- --aUCCCCGGGCgcuccccCGGGaCCGCCGGCCg -3'
miRNA:   3'- aacAGGGGCUCG-------GCCC-GGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 4550 0.78 0.091291
Target:  5'- -gGUCCCCGgggagucacuacGGCCGGGgcacaCGCCGGCCUc -3'
miRNA:   3'- aaCAGGGGC------------UCGGCCCg----GCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 223451 0.77 0.102851
Target:  5'- -gGUCCCucuCGAGuCUGGGCCGCCGcGCCg -3'
miRNA:   3'- aaCAGGG---GCUC-GGCCCGGCGGC-CGGg -5'
14058 5' -67.6 NC_003521.1 + 201383 0.74 0.175395
Target:  5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3'
miRNA:   3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 202287 0.73 0.205845
Target:  5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3'
miRNA:   3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 163 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 240712 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 61766 0.72 0.235047
Target:  5'- --uUCCCCGucaCCGGgaccGCCGCCGGCuCCg -3'
miRNA:   3'- aacAGGGGCuc-GGCC----CGGCGGCCG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.