Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14058 | 5' | -67.6 | NC_003521.1 | + | 152144 | 1.08 | 0.000543 |
Target: 5'- uUUGUCCCCGAGCCGGGCCGCCGGCCCa -3' miRNA: 3'- -AACAGGGGCUCGGCCCGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 29707 | 0.7 | 0.285277 |
Target: 5'- -cGUCCUCGGcGCCuGGCUGCUGaGCCUc -3' miRNA: 3'- aaCAGGGGCU-CGGcCCGGCGGC-CGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 196279 | 0.7 | 0.303176 |
Target: 5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3' miRNA: 3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 88468 | 0.66 | 0.531167 |
Target: 5'- -cG-CCCCG-GCCGGccccagagcagcgucGgCGCgGGCCCg -3' miRNA: 3'- aaCaGGGGCuCGGCC---------------CgGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 11925 | 0.76 | 0.115778 |
Target: 5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3' miRNA: 3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 236674 | 0.75 | 0.15321 |
Target: 5'- -gGUCCUgGGGaaGGggagaGCCGCCGGCCCg -3' miRNA: 3'- aaCAGGGgCUCggCC-----CGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 89160 | 0.73 | 0.201294 |
Target: 5'- ---aCCCUGgacGGCUGGGCCGUgGGCCUg -3' miRNA: 3'- aacaGGGGC---UCGGCCCGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 112690 | 0.73 | 0.201294 |
Target: 5'- --uUCgCCGAGCgCGGGCCGCCcucGGaCCCc -3' miRNA: 3'- aacAGgGGCUCG-GCCCGGCGG---CC-GGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 16807 | 0.72 | 0.215213 |
Target: 5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3' miRNA: 3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 87745 | 0.71 | 0.279301 |
Target: 5'- gUGggCCCCGGcCCGGGCC-CCGGCg- -3' miRNA: 3'- aACa-GGGGCUcGGCCCGGcGGCCGgg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 40485 | 0.72 | 0.235047 |
Target: 5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3' miRNA: 3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 77964 | 0.72 | 0.215213 |
Target: 5'- -gGUCUUgGAGCC-GGCCGCgGGCUCg -3' miRNA: 3'- aaCAGGGgCUCGGcCCGGCGgCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 107067 | 0.86 | 0.022629 |
Target: 5'- -cGUCCCCGGaaucGCCGGGCCuGCCGGCCa -3' miRNA: 3'- aaCAGGGGCU----CGGCCCGG-CGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 100751 | 0.71 | 0.273425 |
Target: 5'- ---aCCCCGAGCUGGGCCuggcgcacucguGCaacgaGGCCUu -3' miRNA: 3'- aacaGGGGCUCGGCCCGG------------CGg----CCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 186328 | 0.79 | 0.075325 |
Target: 5'- -gGUCCac--GCCGGGCCGCCGGCCa -3' miRNA: 3'- aaCAGGggcuCGGCCCGGCGGCCGGg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 2059 | 0.73 | 0.205845 |
Target: 5'- gUGUCCCCaccucugucGAGCU---CCGCCGGCCCg -3' miRNA: 3'- aACAGGGG---------CUCGGcccGGCGGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 151098 | 0.71 | 0.273425 |
Target: 5'- ---cCCUCGGGUCGGGCCGCUGGg-- -3' miRNA: 3'- aacaGGGGCUCGGCCCGGCGGCCggg -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 36675 | 0.7 | 0.29753 |
Target: 5'- -gGUCUcggCCGAGCUGaGGCCGggcuccggcgcCUGGCCCg -3' miRNA: 3'- aaCAGG---GGCUCGGC-CCGGC-----------GGCCGGG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 138024 | 0.78 | 0.084959 |
Target: 5'- cUGcCgCCCGAGCUGgcGGCCGCCGGCgCCg -3' miRNA: 3'- aACaG-GGGCUCGGC--CCGGCGGCCG-GG- -5' |
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14058 | 5' | -67.6 | NC_003521.1 | + | 1155 | 0.74 | 0.175395 |
Target: 5'- -cGUCCCCGGGagccaCGGcGCCGCCuacgggacuggacGGCCUg -3' miRNA: 3'- aaCAGGGGCUCg----GCC-CGGCGG-------------CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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