miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 135181 0.7 0.310188
Target:  5'- ---cCCCCGAGCUGGGCuucaCGCacacGCCCg -3'
miRNA:   3'- aacaGGGGCUCGGCCCG----GCGgc--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 196279 0.7 0.303176
Target:  5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3'
miRNA:   3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 77964 0.72 0.215213
Target:  5'- -gGUCUUgGAGCC-GGCCGCgGGCUCg -3'
miRNA:   3'- aaCAGGGgCUCGGcCCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 138024 0.78 0.084959
Target:  5'- cUGcCgCCCGAGCUGgcGGCCGCCGGCgCCg -3'
miRNA:   3'- aACaG-GGGCUCGGC--CCGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 77598 0.69 0.364869
Target:  5'- -cGUCCgCGAGUCccaGGCCGCCGGagCUa -3'
miRNA:   3'- aaCAGGgGCUCGGc--CCGGCGGCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 118916 0.69 0.336721
Target:  5'- ---cCCCaCGGGCCGGGCCaUCuGCCCc -3'
miRNA:   3'- aacaGGG-GCUCGGCCCGGcGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 29707 0.7 0.285277
Target:  5'- -cGUCCUCGGcGCCuGGCUGCUGaGCCUc -3'
miRNA:   3'- aaCAGGGGCU-CGGcCCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 186328 0.79 0.075325
Target:  5'- -gGUCCac--GCCGGGCCGCCGGCCa -3'
miRNA:   3'- aaCAGGggcuCGGCCCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 187620 0.69 0.329262
Target:  5'- cUG-CCgggCGAGCCGGGCCGCgcgccgcUGGCCa -3'
miRNA:   3'- aACaGGg--GCUCGGCCCGGCG-------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 107067 0.86 0.022629
Target:  5'- -cGUCCCCGGaaucGCCGGGCCuGCCGGCCa -3'
miRNA:   3'- aaCAGGGGCU----CGGCCCGG-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 36675 0.7 0.29753
Target:  5'- -gGUCUcggCCGAGCUGaGGCCGggcuccggcgcCUGGCCCg -3'
miRNA:   3'- aaCAGG---GGCUCGGC-CCGGC-----------GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 17414 0.7 0.316669
Target:  5'- uUUGaCgCCGcGCCGGGgCGCCacacGGCCCg -3'
miRNA:   3'- -AACaGgGGCuCGGCCCgGCGG----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 100751 0.71 0.273425
Target:  5'- ---aCCCCGAGCUGGGCCuggcgcacucguGCaacgaGGCCUu -3'
miRNA:   3'- aacaGGGGCUCGGCCCGG------------CGg----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 16807 0.72 0.215213
Target:  5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3'
miRNA:   3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5'
14058 5' -67.6 NC_003521.1 + 89160 0.73 0.201294
Target:  5'- ---aCCCUGgacGGCUGGGCCGUgGGCCUg -3'
miRNA:   3'- aacaGGGGC---UCGGCCCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 11925 0.76 0.115778
Target:  5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3'
miRNA:   3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5'
14058 5' -67.6 NC_003521.1 + 167832 0.68 0.379542
Target:  5'- ---cCCCCGGGCaCGaccGCCGCgGGCUCg -3'
miRNA:   3'- aacaGGGGCUCG-GCc--CGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 179454 0.68 0.379542
Target:  5'- -gGUCCuuGAGCuguugcaggaagCGGGCCGUgGGCa- -3'
miRNA:   3'- aaCAGGggCUCG------------GCCCGGCGgCCGgg -5'
14058 5' -67.6 NC_003521.1 + 119885 0.69 0.350594
Target:  5'- cUG-CCCCucGCCGGaGCCGCC-GCCg -3'
miRNA:   3'- aACaGGGGcuCGGCC-CGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 201380 0.69 0.336721
Target:  5'- -gGcCCUCGGcGCCGGGCUcgGCCGGCa- -3'
miRNA:   3'- aaCaGGGGCU-CGGCCCGG--CGGCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.