miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 36675 0.7 0.29753
Target:  5'- -gGUCUcggCCGAGCUGaGGCCGggcuccggcgcCUGGCCCg -3'
miRNA:   3'- aaCAGG---GGCUCGGC-CCGGC-----------GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 38601 0.68 0.39232
Target:  5'- gUGUCCCUGGguguucGCCGuaugcguuauuagaGGCgCGCCGGCUg -3'
miRNA:   3'- aACAGGGGCU------CGGC--------------CCG-GCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 40485 0.72 0.235047
Target:  5'- -aGUCCCCGcGaCGacCCGCCGGCCCg -3'
miRNA:   3'- aaCAGGGGCuCgGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 43319 0.66 0.497715
Target:  5'- --uUCCCCGGaacgaacacugcuCCGcGCCGuCCGGCCCg -3'
miRNA:   3'- aacAGGGGCUc------------GGCcCGGC-GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 43535 0.68 0.397662
Target:  5'- --cUCCCguCGAGCCGcccucccgcuccccGCCGCCGGCgCCg -3'
miRNA:   3'- aacAGGG--GCUCGGCc-------------CGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 43814 0.69 0.322588
Target:  5'- aUGUCgCagcAGCCGGgucagccGCCGCCGGCCg -3'
miRNA:   3'- aACAGgGgc-UCGGCC-------CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 43860 0.68 0.379542
Target:  5'- -aGgcgCCCCGGccggcucCCGGGCCGUC-GCCCa -3'
miRNA:   3'- aaCa--GGGGCUc------GGCCCGGCGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 48366 0.68 0.402278
Target:  5'- -cGUCCUgGAaaCCGGcGCCGCCGccauGCCCc -3'
miRNA:   3'- aaCAGGGgCUc-GGCC-CGGCGGC----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 48597 0.67 0.475379
Target:  5'- --cUCCCgCGGcGCCGGGUCGCaagaaacagGGUCCg -3'
miRNA:   3'- aacAGGG-GCU-CGGCCCGGCGg--------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 50870 0.69 0.323251
Target:  5'- -gGUCCCUGAGgaaCGGcUCGgCGGCCCg -3'
miRNA:   3'- aaCAGGGGCUCg--GCCcGGCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 53634 0.69 0.357682
Target:  5'- aUGUCCCCGAuGCaggCGGGCCGUC--UCCg -3'
miRNA:   3'- aACAGGGGCU-CG---GCCCGGCGGccGGG- -5'
14058 5' -67.6 NC_003521.1 + 55240 0.67 0.458544
Target:  5'- -aG-CCCCGAGCgGcucGCCGgCGaGCCCg -3'
miRNA:   3'- aaCaGGGGCUCGgCc--CGGCgGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 59070 0.71 0.245528
Target:  5'- gUUGUCCUCGucGGCCGGaUCGCgCGGCCg -3'
miRNA:   3'- -AACAGGGGC--UCGGCCcGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 59340 0.67 0.475379
Target:  5'- -gGUCCuucaCCGAGCUgggauGGGCCGUCuGCgCCg -3'
miRNA:   3'- aaCAGG----GGCUCGG-----CCCGGCGGcCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 60804 0.66 0.501193
Target:  5'- -gGUCCCgucuccuaCGAGCC--GCUGCUGGCCUu -3'
miRNA:   3'- aaCAGGG--------GCUCGGccCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 61766 0.72 0.235047
Target:  5'- --uUCCCCGucaCCGGgaccGCCGCCGGCuCCg -3'
miRNA:   3'- aacAGGGGCuc-GGCC----CGGCGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 63529 0.67 0.42586
Target:  5'- -gGUCUUCGAGCCcuGGGCCcagcgucacggaGCC-GCCCu -3'
miRNA:   3'- aaCAGGGGCUCGG--CCCGG------------CGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 66764 0.71 0.261972
Target:  5'- --aUCCCgCGGGUgauGCCGCCGGCCCa -3'
miRNA:   3'- aacAGGG-GCUCGgccCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 69698 0.67 0.475379
Target:  5'- -gGUCCUgGuGUCGGuGgCGgCGGCCCu -3'
miRNA:   3'- aaCAGGGgCuCGGCC-CgGCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 73888 0.66 0.527605
Target:  5'- ----gCCCGAGauCCGcaaGGCCGUgGGCCCc -3'
miRNA:   3'- aacagGGGCUC--GGC---CCGGCGgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.