miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 74098 0.69 0.353417
Target:  5'- --uUCCCCGccaaggaugauagcuGGCUGuGGCCGCUGGUCa -3'
miRNA:   3'- aacAGGGGC---------------UCGGC-CCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 74478 0.67 0.471987
Target:  5'- -cGUCCUgggcuuCGAGCUGGuGCCGCCcuucuacuucaacGCCCu -3'
miRNA:   3'- aaCAGGG------GCUCGGCC-CGGCGGc------------CGGG- -5'
14058 5' -67.6 NC_003521.1 + 74598 0.71 0.256393
Target:  5'- -cGUCCCgCG-GCCGGcgcgccucGCCGCCGcGCCa -3'
miRNA:   3'- aaCAGGG-GCuCGGCC--------CGGCGGC-CGGg -5'
14058 5' -67.6 NC_003521.1 + 77598 0.69 0.364869
Target:  5'- -cGUCCgCGAGUCccaGGCCGCCGGagCUa -3'
miRNA:   3'- aaCAGGgGCUCGGc--CCGGCGGCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 77964 0.72 0.215213
Target:  5'- -gGUCUUgGAGCC-GGCCGCgGGCUCg -3'
miRNA:   3'- aaCAGGGgCUCGGcCCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 81712 0.66 0.501193
Target:  5'- -cGUCCCaggaGAGCaCGGaGUCGCCccgcuccaaaaaGGCCa -3'
miRNA:   3'- aaCAGGGg---CUCG-GCC-CGGCGG------------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 83540 0.66 0.518741
Target:  5'- ---cCCCCGua-CGcGGCCGCCGuuGCCCc -3'
miRNA:   3'- aacaGGGGCucgGC-CCGGCGGC--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 85649 0.7 0.29753
Target:  5'- ---cCCCCGgcAGCCGcGGCCGCCaGCUg -3'
miRNA:   3'- aacaGGGGC--UCGGC-CCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 87745 0.71 0.279301
Target:  5'- gUGggCCCCGGcCCGGGCC-CCGGCg- -3'
miRNA:   3'- aACa-GGGGCUcGGCCCGGcGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 87863 0.69 0.357682
Target:  5'- gUGUCCUCGcaggcgcuGGCCaGGCCGuuGGCg- -3'
miRNA:   3'- aACAGGGGC--------UCGGcCCGGCggCCGgg -5'
14058 5' -67.6 NC_003521.1 + 88468 0.66 0.531167
Target:  5'- -cG-CCCCG-GCCGGccccagagcagcgucGgCGCgGGCCCg -3'
miRNA:   3'- aaCaGGGGCuCGGCC---------------CgGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 88552 0.7 0.303808
Target:  5'- --cUCCUCGGGgCaGGGCaccaGCUGGCCCg -3'
miRNA:   3'- aacAGGGGCUCgG-CCCGg---CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 89160 0.73 0.201294
Target:  5'- ---aCCCUGgacGGCUGGGCCGUgGGCCUg -3'
miRNA:   3'- aacaGGGGC---UCGGCCCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 90074 0.68 0.379542
Target:  5'- --cUCgCgGAGCagucCGGGCaGCCGGCCCa -3'
miRNA:   3'- aacAGgGgCUCG----GCCCGgCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 91384 0.66 0.501193
Target:  5'- ---aCCCCGGGcCCGGacccCCGacccaaaucCCGGCCCa -3'
miRNA:   3'- aacaGGGGCUC-GGCCc---GGC---------GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 92179 0.66 0.483912
Target:  5'- --aUCCCCGccgAGCUcgGGGCCGuuuuucgccgcCCGGCCg -3'
miRNA:   3'- aacAGGGGC---UCGG--CCCGGC-----------GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 94955 0.7 0.310188
Target:  5'- -cGUCgUCGGcGCCGcccGCCGCCGGgCCCa -3'
miRNA:   3'- aaCAGgGGCU-CGGCc--CGGCGGCC-GGG- -5'
14058 5' -67.6 NC_003521.1 + 95762 0.67 0.423465
Target:  5'- -aGUCgUCCGAGCCGcccagacggucaucGuGCCGCuCGGCCa -3'
miRNA:   3'- aaCAG-GGGCUCGGC--------------C-CGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 100751 0.71 0.273425
Target:  5'- ---aCCCCGAGCUGGGCCuggcgcacucguGCaacgaGGCCUu -3'
miRNA:   3'- aacaGGGGCUCGGCCCGG------------CGg----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 101370 0.66 0.517857
Target:  5'- -aGUCCCgggugcgCGAGCCGucgcGCCGCuugaCGGCCa -3'
miRNA:   3'- aaCAGGG-------GCUCGGCc---CGGCG----GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.