miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 103225 0.67 0.466922
Target:  5'- -gGUCgCCG-GCCaGGCgG-CGGCCCa -3'
miRNA:   3'- aaCAGgGGCuCGGcCCGgCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 164002 0.67 0.466922
Target:  5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3'
miRNA:   3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 202594 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 13195 0.67 0.450246
Target:  5'- gUGcCgCUCGGGCCgccguguuggaGGGCCGaCCGGCgCCc -3'
miRNA:   3'- aACaG-GGGCUCGG-----------CCCGGC-GGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 222219 0.67 0.458544
Target:  5'- cUUGUCCugaCCGcGGCUGGGCCGCaGGaaCCa -3'
miRNA:   3'- -AACAGG---GGC-UCGGCCCGGCGgCCg-GG- -5'
14058 5' -67.6 NC_003521.1 + 148623 0.67 0.442031
Target:  5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3'
miRNA:   3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 95762 0.67 0.423465
Target:  5'- -aGUCgUCCGAGCCGcccagacggucaucGuGCCGCuCGGCCa -3'
miRNA:   3'- aaCAG-GGGCUCGGC--------------C-CGGCG-GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 101913 0.67 0.433902
Target:  5'- -gGUCCgacaCCGAGCCGGcGUacuCGCCGGUg- -3'
miRNA:   3'- aaCAGG----GGCUCGGCC-CG---GCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 205812 0.67 0.433902
Target:  5'- -cGUCCgCCGGGCaCGacgcaagcGCuCGCUGGCCCc -3'
miRNA:   3'- aaCAGG-GGCUCG-GCc-------CG-GCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 188470 0.67 0.450246
Target:  5'- -cGcCUCCGAGCUacgagcaGGCCGUgGGCCUg -3'
miRNA:   3'- aaCaGGGGCUCGGc------CCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 1439 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 69698 0.67 0.475379
Target:  5'- -gGUCCUgGuGUCGGuGgCGgCGGCCCu -3'
miRNA:   3'- aaCAGGGgCuCGGCC-CgGCgGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 111680 0.67 0.450246
Target:  5'- --aUCCCCuucGAGCUGaGcGCCGCCuGCCUg -3'
miRNA:   3'- aacAGGGG---CUCGGC-C-CGGCGGcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 22387 0.67 0.42586
Target:  5'- aUGUCCuCCGugguGCCGccgcuGUCGCUGGCCa -3'
miRNA:   3'- aACAGG-GGCu---CGGCc----CGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 129812 0.67 0.42586
Target:  5'- -cGUCaagUUGGuGCUGGGCCGCCugcugcuggGGCCCg -3'
miRNA:   3'- aaCAGg--GGCU-CGGCCCGGCGG---------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 114503 0.67 0.42586
Target:  5'- cUGUCC----GUCGuGGCCGCCGuGCCCa -3'
miRNA:   3'- aACAGGggcuCGGC-CCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 118201 0.67 0.433902
Target:  5'- -cGgggCCgCCGAGCgCGcGGCCGCC-GCCg -3'
miRNA:   3'- aaCa--GG-GGCUCG-GC-CCGGCGGcCGGg -5'
14058 5' -67.6 NC_003521.1 + 201666 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 145857 0.67 0.442031
Target:  5'- -cGUCUCUGGGCCcGGCgGCgggCGGCgCCg -3'
miRNA:   3'- aaCAGGGGCUCGGcCCGgCG---GCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 137152 0.67 0.442031
Target:  5'- --cUCgCCCGccauGGCCGcGGCCGCagCGGCCg -3'
miRNA:   3'- aacAG-GGGC----UCGGC-CCGGCG--GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.